Skip to main content

Daily report

AI and science frontiers · 2026-11-10

Only content delivered through the publication boundary on this date is included.

Sealed edition v1

arXiv

Aaronson–Ambainis conjecture proved: low-degree bounded polynomials must have an influential variable, so quantum query speedups need structure

The Aaronson–Ambainis conjecture had been proved only for special classes of polynomials, while general bounded low-degree polynomials had influence bounds decaying exponentially in the degree. This work gives an elementary proof that a function of degree at most d with values in [-1,1] has a variable of influence at least a negative constant power of d; in the original normalization, a polynomial with variance at least 1 also has a variable of influence at least the same order. Consequently, superpolynomial quantum speedups in the query model require structure or a promise on the inputs.

Plant epimutations are not random drift: REED reads one stretch of DNA and predicts where methylation will go

Cytosine methylation at plant CG sites is gained and lost spontaneously, far faster than DNA point mutation. Until now a single site's steady state could only be estimated from the epigenome itself, leaving open whether it is written in DNA or carried by chromatin. REED, built on the NTv3 backbone, predicts every cytosine's methylation from 10 kb of sequence, and that prediction is the site's set point; in Arabidopsis pedigrees, the rice germline and a 330-year-old poplar, the direction and the rate-implied equilibrium of measured epimutations followed it.

arXiv

A 35B verifier stops guessing verdicts: it writes its own counterexamples and lifts judging accuracy from 71% to 87%

A 35B agentic verifier that sees only the problem statement and a candidate program, never the official tests, uses self-generated counterexamples as executable evidence to raise binary verdict accuracy on USACO-Judge from 71.41% to 87.41%.

arXiv

Robot policies learn action dynamics instead of actions: ODE Policy hits 79.2% on LIBERO after one epoch, versus 43.2% at best for baselines

Most robot policies output action values at discrete control steps and leave the continuity of physical motion to be learned implicitly from data. ODE Policy instead learns a neural ordinary differential equation for the vector field of the action, and at deployment integrates each action from the previous one, so the executed trajectory is continuous by construction. After one epoch on LIBERO it reaches 79.2% success against at most 43.2% for the baselines, and it keeps that early lead as the action head of a VLA and of ImageWAM and as the actor of SuperMimic.

Nature Genetics

Childhood brain tumor prognosis moves past subgroup labels: MANTIS draws 10-year individual survival curves from methylation, reaching c-index 0.80

Treating childhood medulloblastoma and ependymoma means trading recurrence risk against the long-term side effects of radiotherapy, yet current clinical indicators and molecular subgroups only give group-level risk. MANTIS takes genome-wide DNA methylation array data plus gene-level copy-number variation and uses a neural network to output individualized 10-year survival probability curves, reaching a c-index as high as 0.80 ± 0.07 in independent clinical trial cohorts, above current clinical indicators and subgroup-only models. An extension of the same framework flags about 60% of average-risk medulloblastoma patients who showed no significant survival disadvantage (P = 0.683) under lower-dose craniospinal irradiation.

arXiv

One robot world model that also acts: GreenWAM maps 20 bodies onto 79 anatomical slots and hits 95.6% instruction success on a real humanoid

Sber Robotics Center released GreenWAM, a robot foundation model rebuilt from Cosmos 3 Edge to serve as both a world model and a policy. A shared 79-slot anatomical action space maps the native joints of 20 robot families onto common leg, torso, arm and finger coordinates, and one model is trained jointly in seven visual and action modes. On WorldArena 1.0 it has the highest trajectory, depth and 3D accuracy among the compared world-action models and video generators; on the real Green humanoid it completes 95.6% of in-distribution instructions, against 88.9% for a policy adapted from Cosmos 3 Edge and 84.4% for π0.5.

bioRxiv

HERACLES skips the tree search: quartet likelihoods rebuild a 150,000-cell lineage in about four hours on one GPU

CRISPR lineage recorders can trace the ancestry of hundreds of thousands of cells, but likelihood-based tree building searches over tree topologies and becomes impractical at that scale. HERACLES places each cell as a point in hyperbolic space, scores the CRISPR editing likelihood of sampled cell quartets, and optimizes those coordinates by gradient descent before a single neighbour-joining pass yields the full tree. On simulated benchmarks its reconstruction error is lower than LAML, Startle-NNI and distance-based methods, and it handles 150,000 cells in about four hours on one GPU.

arXiv

EntNet spots many-body entanglement from low-order spin correlations alone, using 16 local-unitary invariants that carry across chain lengths and Hamiltonian families

Detecting many-body entanglement no longer requires reconstructing the full density matrix or relying on a predefined witness. EntNet turns two- to four-body Pauli correlations on a one-dimensional spin chain into a representation invariant under local basis rotations, sparsely selects 16 feature channels, and learns their spatial arrangement with a Transformer using rotary positional embeddings. On a finite-temperature XY benchmark it reaches 100% AUROC from expectation values of these low-order observables alone and holds the false-positive rate to 0.003 on 2,000 constructively separable states; the same model transfers without retraining to XXZ, frustrated J1-J2 and random local Hamiltonians and to longer chains.

arXiv

Agents learn to think in latent space: HybridAgent gains 10.4% on average across 11 benchmarks while cutting tokens by up to 54.7%

HybridAgent lets a single agent move back and forth between continuous latent reasoning and text interaction within one generation, so part of its thinking leaves token-by-token decoding while tool use stays intact. Text agents previously had to write every step as tokens, while latent-reasoning models lacked native tool access and were hard to inspect. Across 11 benchmarks in mathematics, science, medicine, search and agentic reasoning at 4B to 14B scale, it reports a 10.4% average gain over frontier text and latent agents, with 35.5%–54.7% fewer tokens and 1.8–2.6 times faster inference.

arXiv

JSSA makes token-level sparse decoding gather-free, reaching up to full-KV throughput at 128K context

Long-context decoding is bottlenecked by repeatedly reading a growing KV cache, and sparse attention reads only part of it, yet token-level selection has not reliably delivered both accuracy and lower latency. JSSA scores candidate tokens in a shared low-dimensional query–key subspace and pairs it with a gather-free indexed-attention kernel that keeps a distinct selected token set for each KV head. Across GQA, hybrid sliding-window/global attention and MLA models it stays closest to full-KV accuracy, and on a B200 at 128K context its decoding throughput reaches up to that of full-KV attention.

bioRxiv

SVC treats each gene's intracellular spread as an image patch: other genes in the same cell supply the context for predicting where unmeasured transcripts sit

Subcellular-resolution spatial transcriptomics can locate transcripts inside cells, but earlier methods targeted single analysis tasks and lacked a unified framework for characterizing and predicting gene localization in a cell-specific, context-aware way. SVC represents each gene's within-cell spatial expression as an image patch and uses other genes in the same cell as context, learning cross-gene spatial dependencies through self-supervised masking. On seqFISH+ mouse embryonic fibroblast data, SVC beat four image-based baselines on all six metrics for predicting subcellular patterns of unmeasured genes, with median gains of 5.2%–21.0% over the more challenging baseline pair.

arXiv

Agents tighten single lemmas inside Lean blueprints, giving the first explicit numerical improvement on Grothendieck's constant upper bound

Instead of rewriting whole proofs, AI agents work inside human-built Lean blueprints and tighten intermediate estimates one at a time, so each local improvement propagates along the dependency graph to the final bound. On Grothendieck's constant this pipeline gives the first explicit numerical improvement over Krivine's 1977 upper bound; on Korenblum's constant it improves Wang's 2025 lower bound. With the blueprint removed, the agent wrote plenty of Lean but improved nothing.

arXiv

MarsNet learns the Martian atmosphere from observations alone: 4.2 K near-surface temperature error and the best surface pressures of four products

The Martian atmosphere has been described by reanalyses that assimilate spacecraft retrievals into general circulation models, so where observations are sparse their fields largely reflect the model. MarsNet trains a two-hour forecast and a per-window observation update jointly inside a fixed physical structure, using no reanalysis or model field as input or target. On MGS radio-occultation temperatures assimilated by no dataset, it matches or improves on the three reanalyses in the lowest three scale heights, with a near-surface RMSE of 4.2 K against 4.4–5.4 K, but is less accurate aloft.

arXiv

One2N pushes a 0.7° forecast model to 0.07°: four weeks on one 80 GB GPU, tropospheric skill intact

As Earth-system AI models approach kilometre scales, halving grid spacing quadruples the grid-point count and the end-to-end training cost. One2N splits resolution refinement into successive increments: at each level the complete parent predictor is frozen and only a cross-resolution residual correction module is trained, so the parent's activations and optimizer states are never retained. One refinement level on the NeuralGCM-0.7° baseline yields One2N-0.07°, trained for about four weeks on a single 80 GB A800 GPU; against HRES-0.07° analyses it keeps the parent's tropospheric skill while reducing upper-stratospheric errors and resolving finer structure.

arXiv

e-means reaches k-means convergence in one-tenth the epochs, clustering 10 billion embeddings 9.5 to 45.5 times faster on GPUs

e-means replaces the k-means centroid update with a mini-batch exponential moving average and uses fitted scaling laws to set batch size and decay directly from the problem configuration, so no hyperparameter sweep is needed. Across embedding datasets it reaches the loss Lloyd k-means attains at 25 epochs in 1.4 to 2.6 epochs, translating to 9.5 to 45.5 times wall-clock speedups over Flash-KMeans while converging to a lower loss. On DINO10B, the exact-assignment version partitions 10 billion vectors into 16 million clusters in 2.5 epochs at a loss below Lloyd at 25 epochs.

arXiv

A small model plays skeptic to a large one: DoubtLess trims Qwen3-32B's chain of thought by 31% without retraining

Reasoning models often keep re-checking after they have reached an answer, stretching the chain of thought. DoubtLess has a small model that shares the large model's tokenizer read the same chain twice, once told to go straight to the answer and once told to double-check every step, and adds the scaled difference of the two logit vectors to the large model's logits at every step, acting only at decoding time with no weight changes. On seven competition-mathematics, graduate-science and programming benchmarks, Qwen3-32B steered by Qwen3-0.6B uses 31% fewer thinking tokens at unchanged accuracy, a larger cut than five inference-time baselines.

arXiv

A causal answer to whether an AI agent should be reviewed mid-task: randomized interventions inside one trajectory show effects swing by action and state

Agent evaluation has relied on fixed benchmarks that report task success or failure but cannot say whether reviewing or steering an agent mid-trajectory is worth it at deployment. Researchers bring micro-randomized trials into agent trajectories, assigning review or direct execution with equal probability at each eligible decision, then estimate causal effects with augmented inverse probability weighting and structural nested mean models. On τ-bench Retail, ToolSandbox and ImpossibleBench, review effects vary substantially across tool-call types and agent states, and the same data yield decision-group risk rankings.

arXiv

Finite experience can pin a rule for any length: spatial memory built as a universal computer holds to 500 symbols after short-string training

A theory treats spatial memory as a universal computer: a learner that reads only coincidences, whether two quantities are equal, rather than coordinates such as position or count that keep taking new values, has its rule fixed by finite experience at every length. The resulting machine pairs coprime-period rings, called clocks, with a controller that never reads them; trained on strings of up to 40 symbols, it holds its rule to length 500 on nine of fifteen benchmark tasks, five of which no LSTM or Transformer solves, and after training with new periods it reverses strings of 15,015 symbols without error before failing on the predicted curve.

bioRxiv

π-SPECFormer learns from 291 million mass spectra and flags six mutation peptides missing from databases in lung adenocarcinoma

Conventional database searching assigns high-confidence peptides to only about 20% to 31% of acquired spectra, leaving the rest unread. π-SPECFormer was pre-trained on 291 million tandem mass spectra in two stages: self-supervised learning of fragmentation patterns, then refinement with peptide–spectrum match groupings. It beat task-specific baselines in de novo sequencing, spectrum clustering and modification detection, and in 103 lung adenocarcinoma samples it produced nine high-confidence mutation peptides, six of them absent from the public databases examined.

bioRxiv

Why place cells fire in many fields across large spaces: a hierarchical predictive map ties field statistics to the scale of behavior

In large environments at naturalistic scale, rat and bat hippocampal CA1 place cells often carry multiple irregularly spaced firing fields, whereas the classical single-scale successor representation holds only in small enclosures. The factorised hierarchical successor representation (fHSR) folds one-step actions together with subgoal-directed subroutines into a predictive map, then decomposes the maps of several tasks into a non-negative overcomplete basis that gives each model cell its tuning. On a 48 m rat track and a 200 m bat track the model reproduced the gamma-Poisson overdispersion of field counts, and it predicted a spatial periodicity of population activity whose wavelength is independent of track length, a prediction tested in rat data.

arXiv

Equivariant message-passing networks get a universal approximation theorem: a layer cutoff shorter than the physical range still captures atomic energies

For a class of equivariant graph-neural-network interatomic potentials, a universal approximation theorem now covers atomic energies: provided every atom's neighbors are reached within a common number of layers and no more than a given number of neighbors sit at a common distance inside the layer cutoff, a multilayer network whose layer cutoff is shorter than the physical range still approximates the atomic energy over that range, with spherical harmonic filter degrees no larger than that neighbor bound. The production DPA4 architecture inherits the result by simulating the constructed layers and realizing the bilinear readout.

arXiv

Opponent shaping without peeking at opponents: a meta-learned update rule tops a five-game tournament

Methods that shape how an opponent learns in general-sum games have needed access to that opponent's policy, parameters or learning rule. A study carries the single-agent practice of meta-learning an update rule into multi-agent play, meta-training a rule that reads only the agent's own experience and payoff matrix, so deployment needs no privileged opponent information. Across round-robin tournaments in Prisoner's Dilemma, Matching Pennies, Chicken, Stag Hunt and Coin Game, the rule ranks first in normalised mean score over all five games and first in self-play.

NVIDIA Blog

Robots rehearse delicate assembly in simulation: NVIDIA's Isaac Lab 3.0 with Newton reaches up to 2.5x training throughput

At CoRL, NVIDIA released an open robotics stack including GR00T 2, a world action model built on Cosmos, the Isaac Lab 3.0 simulation framework and the Isaac Lab-Arena evaluation framework. Tighter integration between Isaac Lab 3.0 and the open-source Newton physics engine lets it model deformable objects such as cables and cloth and multi-joint robotic hands; on a vision-based dexterous manipulation benchmark, Isaac Lab 3.0 with Newton reached up to 2.5x the training throughput of Isaac Lab 2.3 with PhysX. GR00T 2 averaged 71% success across 50 tasks with one demonstration per task, rising to 95% with five.

arXiv

FOSCAR stops dequantizing each KV value: folding scales and offsets into the matmul lets 2-bit decode attention beat BF16 on H100 and B200

Low-bit KV caches cut memory traffic, yet existing kernels still convert every integer back to floating point and apply its scale and offset, so instruction issue becomes the new bottleneck. FOSCAR folds each quantization group's shared scale and offset into the other matrix operand or the partial product, and builds Tensor Core operands directly from packed integers with bit manipulation. Its INT2 kernels reach geometric-mean speedups over FlashInfer BF16 on H100 and B200, and the kernel library is open-sourced.

arXiv

WebCoder trains frontend agents on a living project: 72.8 requirement satisfaction beats Claude-Opus-4.8's 65.1

WebCoder-27B, trained during an internship at Zhipu AI, keeps reproduction, generation, modification and repair on one evolving project state and scores reinforcement learning by how well the executable application meets task requirements. On the new Webdev-Bench its requirement satisfaction rises from 64.8 for the Qwen3.8-27B base model to 72.8, above Claude-Opus-4.8 at 65.1; on Vision2Web its average visual and functional score rises from 41.1 to 62.4, on par with Claude-Opus-4.8 at 62.5.

arXiv

Verifiable-reward RL gets its first prompt-level privacy guarantee, and the reward signal still lifts accuracy through the noise

Reinforcement learning with verifiable rewards (RLVR) trains a language model on problems that may themselves be confidential, and the released weights can reveal which problems it saw. DP-GRPO aggregates all responses to one prompt into a single gradient, clips it once and adds Gaussian noise, so the privacy budget depends on neither the number of responses per prompt nor the clipping norm; the authors describe it as the first differential privacy guarantee for RLVR training. Training Qwen2.5-1.5B-Instruct with LoRA at a per-run budget of 8, the reward signal beats a control that removes only the reward by 2.65 points on MATH and 3.24 on GSM8K, positive in every seed.

arXiv

Cepheid splits residual structure from physical scale: 15.6% and 10.1% lower completion error on unseen cloth and legged bodies than harmonic extension

In sparse-to-dense mesh motion completion, residual priors trained on one geometry family often fail to beat parameter-free harmonic extension, because residual amplitude varies by more than an order of magnitude across families and densities while the target motion is unknown at test time. Cepheid learns only a dimensionless residual structure and recovers physical amplitude from observables plus a lightweight correction fitted on training sources. The unified model stays below harmonic extension on all five evaluated families, cutting error by 15.6% on an unseen cloth sheet and 10.1% on procedural legged bodies, without skeletons, registration, or cross-mesh correspondence.

arXiv

Humanoid running and jumping need more than motion: Contact-UAN patches the actuator force model with 6.5 minutes of walking data

Humanoid policies learned in simulation can transfer motions to hardware while failing to transfer the force interactions learned in training, which costs torque efficiency, force-tracking accuracy and impact absorption. Contact-UAN keeps the simulator's rigid-body and contact physics and learns only a residual correction on the actuator command channel, using onboard proprioception to infer a stance-foot pose so replay starts with hardware-consistent contact forces. On a Unitree G1, a single residual model trained on 6.5 minutes of real walking data yields 20% lower running torque and 43% lower force-tracking error, and supports stable jumping and landing.

arXiv

Low-bit inference stops choosing between accuracy and speed: StrataFlux streams refinement bits from RAM and SSD, cutting 2-bit Llama-3.1-8B perplexity from 9.46 to 8.40

StrataFlux, from Cornell and Carnegie Mellon researchers, keeps low-bit weights and KV cache resident on the GPU and fetches only a small set of refinement bits from host RAM or SSD for the computation at hand, recovering accuracy while retaining quantization's memory and speed advantages. On an RTX 5090, 2-bit Llama-3.1-8B-Instruct weights drop WikiText-2 perplexity from 9.46 to 8.40 while keeping 95.4% of the quantized base's throughput; with 2-bit weights and KV, Qwen3-8B's AIME 2024/2025 accuracy rises from 11.0% to 47.1% at unchanged GPU memory use.

arXiv

Long video generation stops forgetting with time: Smart addresses a fixed-size slot memory by camera pose and still recalls old scenes beyond its training horizon

Long-horizon video generation has traded between two kinds of memory: explicit geometric caches recall a place by location but grow with the scene, while recurrent memories stay constant-size yet let old observations fade with time. Smart turns a fixed-capacity slot memory into one addressed by camera pose, so writes and reads depend on where something was seen rather than how long ago, and a diffusion generator uses the memory's confidence to decide where to trust it. On long trajectories in Memory Maze and Minecraft it keeps high-fidelity recall far beyond its training horizon at constant memory and per-step cost.

arXiv

Unit-test rewards teach models to edit more: PreciseCoder cuts average edits from 7–15 lines to 3 without losing pass rate

Reinforcement learning from unit tests raises pass rates but also teaches code models to edit more and to invent bugs in programs that are already correct. PreciseCoder adds a signal for semantically verified edit precision and recall against a reference repair; on 4B, 9B and 27B models it cuts the average edit from 7–15 lines to 3 at a pass rate on par with unit-test-only training, and raises the no-edit rate on correct code to 47–52%.

arXiv

Reasoning-model RL training stops tuning only execution: RPEG also searches pipeline structure, up to 2x faster than ReaL on 256 GH200 GPUs

Reinforcement-learning training of reasoning language models chains generation, assessment and training across several large models each step, and existing systems usually optimize only part of that design space. RPEG places pipeline structure, including bounded asynchrony and actor–critic sharing, and execution choices such as stage fusion, fine-grained scheduling and multi-dimensional parallelism into one graph searched jointly, backed by a hardware-calibrated analytical performance model. On up to 256 GH200 GPUs its runtime is up to 2x faster end to end than ReaL, cuts step latency by up to 2.48x versus verl, and raises hardware utilization by up to 30%.

arXiv

Beyond the residual stream, a depth memory: LDM beats PreLN, mHC and AttnRes perplexity at 400M and 1.5B

Transformers have long passed information across depth by adding layer outputs in a residual stream, and recent alternatives mHC and AttnRes make that depth aggregation more expressive. Depth Memory recasts cross-layer flow as streams that store and retrieve layer representations, and from it comes Linear Depth Memory (LDM), which treats retrieval across depth as a regression solved exactly by recursive least squares while carrying a residual stream, a matrix memory stream and an inverse covariance stream. Pretrained on 400M Llama-like and 1.5B Qwen-like backbones with 50B and 100B FineWeb-Edu tokens, LDM reaches lower validation, WikiText-2 and LAMBADA perplexity than tuned PreLN, mHC and AttnRes, with competitive zero-shot accuracy.

bioRxiv

CellScribe folds cell identity and state into one generative interface: 0.223 macro-F1 across 309 held-out types, ahead of a frozen-embedding probe

Single-cell annotation has long treated cell identity (lineage) and state (active transcriptional programs) with separate tools, while fixed-output classifiers can only return predefined types. CellScribe feeds frozen single-cell foundation-model embeddings into a pretrained language model through AdaLN adapters, so one shared model generates either an ontology-grounded cell type or a meta-program profile with activity scores under task-specific prompts. On the 309-type, 4.44M-cell study-holdout split of CELLxGENE, the full pipeline reaches 0.223 macro-F1 and 0.484 weighted-F1, above the 0.194 and 0.366 of a supervised probe on frozen scFoundation embeddings; on malignant cells from held-out 3CA studies it reaches 0.344 hallmark accuracy against the probe's 0.227.

Expert pruning stops scoring experts one by one: HOPE counts their partnerships, and at 50% pruning beats the unpruned model on agentic coding

Mixture-of-experts models must hold every expert in memory at inference even though each token uses only a few, so deleting the least important experts is a common compression route. HOPE writes the pruning error as a sum of pairwise expert interaction terms, builds an interaction matrix from calibration data, and solves a quadratic program to choose the prune-set. Across Qwen3.5-122B, Qwen3.5-35B and GLM-4.5-Air, HOPE holds an average rank of 1.58 at 50% pruning versus 2.42 for the next-best method, REAP; Qwen3.5-35B-A3B scores 42.3 on SWE-Bench Pro, matching the unpruned model's 41.8 while REAP falls to 36.2.

arXiv

Intravascular OCT drops closed-form fits: DiffOCT inverts one image for per-pixel attenuation and transfers to 29,269 clinical frames

Intravascular optical coherence tomography (OCT) images entangle tissue attenuation with the imaging system's own physics, so attenuation has been estimated with simplified closed-form inversions or with learned inverses tied to a specific scanner. DiffOCT writes the Beer-Lambert attenuation model as a differentiable forward model and runs gradient descent on a single B-scan to recover attenuation per pixel, with no training data or segmentation. Across 5,120 inversions on five lipid phantoms, recovered values rose monotonically with scatterer concentration and matched curve-fitting slopes; the same procedure ran unmodified on 29,269 clinical pullback frames from 128 patients, though the clinical data show geometric transfer only, not calibrated absolute values.

PhAI Labs

Research agents learn from their own research experience: two rounds of self-improvement lift hypothesis testability

Whether research agents can keep improving from their own research experience depends on turning a hypothesis into an investigation that can actually run and on knowing which contribution to reinforce. DiscoveryRSI builds research trees of hypotheses through multi-agent evolutionary search, keeps the evidence and decisions behind every proposal and revision, and uses those records to train the model and refine the workflow. After two rounds of self-improvement, mean hypothesis quality rises from 4.86 to 5.39, with gains concentrated in testability: falsifiability from 4.00 to 6.20 and data resolvability from 3.73 to 4.99.

Expert pruning stops scoring experts one by one: HOPE counts their partnerships and, at 50% pruning, beats the unpruned model on agentic coding

Mixture-of-experts models must keep every expert in memory at inference even though each token uses only a few, so deleting experts by independent importance scores is a common fix. HOPE writes the pruning error as pairwise interaction terms between experts and selects a whole prune-set with a quadratic program, reaching the best average rank across three models, two calibration datasets and several benchmarks. On Qwen3.5-35B-A3B at 50% pruning it scores 42.3 on SWE-Bench Pro, matching the unpruned model's 41.8 while the first-order method REAP falls to 36.2.

arXiv

SensDiff writes chemical rules into 3D molecule diffusion training in sequence, reaching 96.9% validity on QM9

Diffusion models for 3D molecules learn atomic distributions implicitly from data, so samples can be statistically plausible yet chemically invalid. SensDiff turns four physicochemical rules, steric non-overlap, bond length, bond angle and valence, into differentiable energies that are activated in a coarse-to-fine order with adaptive weighting during training, so the rules enter the generative dynamics rather than only correcting sampling. On the QM9 and GEOM-Drugs benchmarks it reaches 96.9% and 97.2% validity, which the authors report as better than the compared baselines.

bioRxiv

Embryo lineages don't take the least-action route: after removing the centroid measurement floor, worm paths still run about twice as costly

Single-cell atlases measure each cell once, so a "developmental trajectory" is a population centroid stitched across embryos, not the path of any cell. LADD learns a stochastic developmental vector field from time-series single-cell transcriptomics, computes minimum-action and minimum-time paths with large-deviation theory, and uses a three-layer calibration to separate the generic cost of centroid measurement from genuine path deviation. In the lineage-resolved C. elegans atlas the raw action ratio is 3.79, yet forward-simulated ensembles of the learned model itself score 2.07, leaving a genuine excess of about two-fold; in zebrafish the observed ratio sits entirely at the model's floor.

Protocol state machines skip retrieval: State-inferer slices code per transition for an LLM and reaches a strict F-score of 95.2

State-inferer recovers a protocol implementation's state machine by program slicing: from each state-variable assignment it runs depth-bounded forward and backward searches on the system dependence graph, hands the LLM one compact fragment per transition, then specializes RFC security properties into linear temporal logic formulas over that model and checks them with nuXmv. On seven open-source TLS, IKEv2 and SSH implementations it reaches a macro-average strict transition-level F-score of 95.2 against 78.9 for the strongest baseline, Codex, and uncovers four previously unknown vulnerabilities, all assigned CVE or CNVD identifiers.

bioRxiv

Mass-spec sequencing stops relying on spectra alone: PepPr adds a proteome prior and lifts median peptide recall by 15.8 points across nine species

PepPr uses a peptide language model trained on a reference proteome as a prior, fused with spectral evidence at every step of autoregressive decoding rather than applied as post hoc correction. On the nine-species dataset with Casanovo as the base model, median peptide recall rose by 15.8 percentage points, improving all nine species; on single-amino-acid variants and antibodies, variant identification was not suppressed, and recall of peptides spanning the variable-constant boundary rose from 0.23 to 0.68.

arXiv

Soft-arm reinforcement learning drops from three years to three hours: a six-dimensional reduced model trains a tracker with 40% lower error than an RNN policy

Reinforcement-learning control policies for a pneumatically actuated soft arm can be trained entirely on an offline reduced model instead of through repeated interaction with fragile hardware. Soft robots have lacked a reliable, fast simulator, and trial and error on the hardware itself is costly. The arm's dynamics are reduced to a six-dimensional adiabatic spectral submanifold (aSSM), and a polynomial ordinary differential equation with only 6,924 parameters serves as the training environment; a tracking policy trains in three hours and deploys without fine-tuning, with 40% lower tracking error than otherwise identical policies trained on a 4.8-million-parameter RNN or a 1.7-million-parameter transformer.

arXiv

Causal discovery now reads direction from a symbolic-regression posterior: causalBMS tops 13 of 21 CauseMe dataset-metric pairs and returns closed-form mechanisms

Causal discovery no longer has to rest on conditional-independence tests or a single best-scoring model. causalBMS scores each candidate parent by how often it appears in expressions sampled from a Bayesian symbolic-regression posterior, so it still gives a direction in bivariate, strongly autocorrelated and high-noise settings. On the CauseMe benchmark it ranked first in 13 of 21 dataset-metric pairs and second in four more, while also returning closed-form functional forms.

bioRxiv

Single-cell libraries already hold RNA-end evidence: scPolyA turns polyadenylation sites into comparable cell and tissue measurements

Conventional 3′-end single-cell and spatial transcriptomes were built to count gene expression, yet a small subset of reads carrying untemplated poly(A) tails marks where RNAs actually end. scPolyA uses those tail reads to discover polyadenylation sites de novo, then sets UMI-counting intervals from total-read coverage and reports per-cell or per-spot terminal-site usage, 3′ UTR length and intronic polyadenylation. Across eight single-cell datasets, 63.3% of its sites fell within 25 nt of PolyA_DB 3, above polyApipe, scAPAtrap, Sierra and SCAPE and close to DeepPASS-filtered SCAPTURE.

arXiv

Pathology agents stop answering one slide at a time: PlanPath turns a question into an exploration plan and reaches 72.71% total accuracy on renal cancer

A pathology case often spans dozens of slides from different specimens, yet existing pathology agents analyze one slide at a time and describe morphology rather than measure it. PlanPath turns a diagnostic question into an exploration plan, routes to the slides likely to carry the evidence, then zooms from tissue architecture down to cells for counts and proportions, aggregating cross-slide evidence into a traceable answer. On patient-level renal and gastric cancer datasets, PlanPath reaches total accuracy of 72.71% and 60.24%, 12.14 and 9.43 percentage points above the strongest baseline.

arXiv

A momentum-space reference goes onto a quantum processor: correlator optimization moves after measurement, reaching 4.40% error on 32 qubits

Ground-state calculations for the two-dimensional Fermi–Hubbard model have been stuck on a basis mismatch: momentum-space matrix product states are compact, while the diagonal correlators that capture short-range correlation act naturally in real space. The new scheme has a quantum processor prepare and rotate a bond-dimension-4 momentum-space matrix product state, sample in bases fixed by the Hamiltonian, and optimize the correlator entirely in classical post-processing with no quantum-classical feedback loop. On 32 qubits of Quantinuum's H2-2, postselection gives a 4.40% relative ground-state energy error for the half-filled lattice, reduced further by calibration using low-order moments from the matrix product state.

arXiv

Differentiable causal discovery gains finite-sample guarantees: GLM-DAGs bound error for logistic and Poisson models

Causal structure learning built on differentiable acyclicity constraints has lacked finite-sample theory for nonlinear models. This work sets each node's conditional distribution to a generalized linear model, searches all topological orders through one continuous objective, and proves that global minimizers select the sparsest representation at the population level and attain an estimation error rate up to log factors at the sample level. Experiments examine structure recovery accuracy and runtime on logistic, Poisson and Gaussian DAGs.

arXiv

MICE, a mouse-behavior foundation model, handles one to four cage mates from a single checkpoint: its social stage sharpens multi-animal behavior

Mouse behavior analysis has relied on self-supervised pose models that encode each animal independently, yet aggression, courtship, mounting and allogrooming are inherently multi-animal. MICE aligns six mouse-pose datasets to a universal 12-keypoint vocabulary and pretrains jointly, pairing a hierarchical individual encoder for per-mouse kinematics with a Perceiver-style social encoder whose learned latent codebook handles any group size, so one checkpoint serves different animal counts without retraining. Across six datasets and four evaluation protocols, MICE matches or exceeds prior keypoint-based baselines, and layer-wise probing shows the social stage improves discriminability beyond the individual encoder.

arXiv

SEEM stumbles on one-pixel vessels: a 0.47M-parameter read-out adapter lifts 3 mm large-vessel Dice to 91.93%

The interactive segmentation model SEEM performs poorly on OCTA retinal vessels out of the box, reaching only 75.83% Dice on large vessels with a frozen encoder, and every candidate mask it can produce is read from the same quarter-resolution feature maps, too coarse for vessels one to three pixels wide. The Read-out Basis Adapter (RBA) adds 32 half-resolution basis maps at the read-out, which each candidate accesses through a zero-initialised projection, for 0.47M trainable parameters. On OCTA-500 3 mm large vessels, averaged over three seeds, it reaches 91.93% Dice and 85.16% IoU, 1.72 and 2.90 points above Conv-LoRA, with gains concentrated on thin vessels and edges and no significant difference on the FAZ.

arXiv

Gate-level netlists become readable RTL: RTLREX recovers equivalent designs for all 30 contest benchmarks

When the original RTL and documentation are gone and only a gate-level netlist or a complete truth table remains, RTLREX has a large language model choose analyses among domain-specific tools, build candidate RTL, and confirm each result with independent equivalence checking. On the 30 benchmarks of ICCAD 2022 CAD Contest Problem A it recovered equivalent high-level RTL for all of them, above WolFEx's 26, and on the 26 recovered by both it cut mean syntax cost by 20.5% relative to WolFEx.

arXiv

SCOUT folds 19 side effects into one learned outcome and flags lithium effects in bipolar observational data

SCOUT compresses high-dimensional, noisy baseline variables into at most two adjustment scores and learns a treatment-responsive composite outcome inside that low-dimensional space, yielding average and heterogeneous treatment-effect estimates from observational data. Among 481 STEP-BD participants with bipolar disorder, the learned composite put its largest weights on nocturia, tremor, polyuria and nausea/vomiting, with a mean effect of 0.250 and Holm-adjusted values of 0.0026 for the average effect and 0.033 for heterogeneity. On synthetic and semi-synthetic data its average-effect error was close to CV-TMLE while CATE error for its score-indexed target was substantially lower.

arXiv

Audio diffusion transformer takes fMRI directly: skipping intermediate embeddings lifts both acoustic and semantic reconstruction scores

MAAS replaces the text-embedding conditioning of a pretrained audio diffusion transformer with region-of-interest fMRI responses, removing the decoder that previously predicted an external stimulus representation such as CLAP or YamNet. On a 7T fMRI dataset it improves acoustic and semantic metrics, including CLAP similarity, pairwise identification accuracy and Mel-SSIM, over baselines such as two-stage fMRI-to-latent conditioning. The framework also uses a fidelity metric grounded in a computational model of auditory cortex to quantify how individual auditory regions contribute to the reconstructed audio.

arXiv

Epilepsy detection across patients with different electrode layouts: MOSAIC infers channel graphs and steadies them by self-distillation

Intracranial EEG electrode count and placement differ from patient to patient, so detectors with a fixed channel topology generalize poorly under subject-independent evaluation. MOSAIC encodes each channel with a shared convolutional encoder, then a single channel-attention layer infers a weighted inter-channel adjacency from the encoded features without any preset montage graph; an exponential moving average self-distillation term pulls each window's adjacency toward a slowly updated per-patient teacher. Across four public iEEG corpora, MOSAIC's F2 on both the SWEC-ETHZ short-term and long-term corpora exceeds the listed baselines, by 1.8 points over the strongest baseline on the short-term corpus and 3.3 points on the long-term one.

arXiv

Why elliptic and triangular flow nearly match in ultra-central lead-lead collisions: UCC-DiffHIC event-by-event runs supply the response decomposition

In ultra-central heavy-ion collisions the measured ratio of elliptic to triangular flow approaches unity, whereas linear scaling from initial eccentricity predicts a clear hierarchy. UCC-DiffHIC, an AI-accelerated event-by-event hydrodynamic model, generates these extremely rare collisions and decomposes the flow ratio exactly into a linear-response term and the ratio of the Pearson response correlations for elliptic and triangular flow. For the standard TRENTo parameter set, the suppression from residual fluctuations offsets the linear-scaling enhancement, bringing the ratio near unity in the most central collisions in agreement with CMS; two Bayesian parameter sets compensate less completely.

arXiv

Multi-step reaction mechanisms move beyond single-step templates: graph-guided preference data lifts GRMP pathway accuracy to 48.1%

Multi-step reaction mechanism prediction has largely stayed at the level of single elementary steps and generalizes poorly to unseen reaction spaces. GRMP couples a chemical mechanism knowledge graph, completed with expert templates, to a language model: a graph convolutional network generates candidate pathways that become preference data for direct preference optimization, and at inference a relation retrieval module pulls graph evidence to refine the pathway. GRMP reaches pathway accuracy of 48.1% on ChemMechQA and 57.9% on oMe-Gold, the highest among the compared methods.

arXiv

Two-qutrit steering detection turns to correlation-enhanced quantum reservoirs: unseen Werner-state accuracy reaches 96%, and new steerable partially entangled states are flagged

Deciding whether a mixed two-qutrit state is steerable has relied on semidefinite programming over a finite measurement set, and that does not necessarily carry over to a different state family. Correlation-enhanced quantum reservoir processing (CEQRP) adds two-body spin-correlation readouts from a spin-1 reservoir to the feature vector, letting logistic regression reach high accuracy on unseen Werner and isotropic states. With training augmented by samples certified by two steering criteria, classifiers flagged partially entangled states whose steerability semidefinite programming then independently confirmed using seven projective measurement settings.

bioRxiv

DNA-LLM2Vec turns causal DNA decoders into bidirectional encoders, with frozen-probe gains that shift by task and backbone

DNA-LLM2Vec converts pretrained causal DNA decoders into frozen bidirectional encoders in stages: it opens bidirectional context, repairs the resulting mismatch with masked next-token prediction, then adds contrastive views encoding strand and positional invariance. Across two backbones, DNAGPT and HyenaDNA, and seven biological task families, the benefit is not uniform but depends on task structure and backbone; crop contrastive learning helps most for extended-context families such as enhancer–promoter interaction and Virus-COVID, reaching frozen Avg-EPI MCC of 27.5% and 26.7%.

arXiv

A camera that hunts the wake instead of holding still: an agent finds hydrofoil wakes in a real water tunnel in about half a full scan's time

Particle image velocimetry (PIV) usually fixes the imaging position before the measurement, so if the structure of interest departs from expectation, no later algorithm can recover information that was never captured. This work treats camera placement as a closed-loop decision variable: a DreamerV3 agent trained in Isaac Sim drives a 6-DoF arm using only the velocity field and uncertainty estimated by LIMA to locate, frame and resolve a hydrofoil wake. After zero-shot transfer to a real water tunnel, the agent locates wakes of randomly placed hydrofoils and measures them at higher resolution and lower flow-statistics error than a fixed view, in roughly half the time of a full scan and with far fewer image pairs.

arXiv

Remote-sensing fusion stops optimizing pixels alone: Lance closes a text loop and lifts detection mAP by 6.4 on a held-out detector

Remote-sensing image fusion and semantic interpretation have usually been optimized separately, so good fusion metrics need not preserve downstream retrieval or detection utility. Lance maps each input to a closed-vocabulary text record of scene, objects and layout, conditions fusion on that language, re-describes the fused image as text, and back-propagates through text consistency and an anti-collapse text–mask contrastive loss with negative queries. Across seven test sets on GF2, QuickBird, WorldView-III and WorldView-II, reduced-scale reference metrics improve by up to 11.7% (median 2.1%) over the strongest learning baseline, and a held-out RemoteCLIP verifier plus a supervised DOTA detector give +6.4 mAP@0.5 over the closest competitor.

Molecular generators learn to unlearn: SemlaFlow cuts motif-bearing molecules from 31.1% to 2.2%

Molecular generators often emit reactive, metal-binding, charged or assay-interference motifs, while molecules lacking a given motif are scattered across chemical space and hard to learn as a positive class. Negative extrapolation (NE) instead fine-tunes on motif-containing molecules and reverses the resulting weight update to suppress the motif directly. On the 3D flow-matching generator SemlaFlow, standard NE lowered the fraction of valid molecules carrying any target motif from 31.1% to 5.3% but cut RDKit-valid graph yield from 93.9% to 65.9%; adding a correction direction learned from motif-free molecules brought the motif fraction to 2.2%, restored valid graph yield to 88.3%, and raised fixed-budget 3D usable yield from 60.0% to 80.8%.

medRxiv

IBDex freezes 3,168 gut biopsies into one reference atlas: deep remission quiets inflammation but leaves a disease state behind

Bulk mucosal RNA sequencing in inflammatory bowel disease has been analyzed one cohort at a time, so historical data accumulate without becoming a reusable reference. IBDex trained a tissue-aware conditional variational autoencoder on 3,168 biopsies from 1,680 patients across four cohorts and suppressed cohort identity adversarially, then froze the gene interface, encoder, decoder, pathway basis and phenotype directions. After freezing, dataset identity fell to balanced accuracy 0.307 against chance 0.250 while inflammation stayed recoverable (AUC 0.82); in 93 patients with concordant endoscopic and histological remission, inflammation approached controls (AUC 0.58) but disease state stayed displaced (AUC 0.725).

arXiv

Interatomic potentials drop the single cutoff: MCSA stacks three radial scales and cuts thermal-conductivity error by 13.7%

SO(3)-equivariant graph-neural-network interatomic potentials usually use one cutoff radius, so radial interactions carry a single characteristic spatial-frequency scale. MCSA fuses radial kernels with different cutoff radii before the angular tensor product, covering several scales with one angular computation. Across the Nequix, Eqnorm and EquiformerV3 backbones, energy, force and stress errors fall on both in-distribution and out-of-distribution tests; Nequix+MCSA lowers the symmetric relative mean error of lattice thermal conductivity from 0.487 to 0.420, with per-material time rising from 1.107 to 1.136 minutes.

arXiv

A PMSM digital twin that relearns its own step: FPGA runs the network, and a shifted machine is re-approached in 94 seconds

Real-time digital twins of permanent magnet synchronous machines have relied on offline-identified parameters or finite-element flux look-up tables, which must be regenerated when the machine changes. The Inferencer-in-the-Loop architecture has a field-programmable gate array execute a physics-guided network while a GPU retrains it from reference data, switching weights only after validation. Across damper circuits, shifted parameters and an FEA-calibrated saturated machine, one kernel form reaches average normalized mean absolute errors of 0.19%–0.67% at measured kernel latencies of 0.30–0.34 microseconds; on a 200-W drive, a residual form gives errors of 5.9%–9.4% of measured RMS over six held-out runs.

arXiv

IWIBench lets large models rewrite a small model's weights: structured output scores zero across all ten editors, while alias edits hit the ceiling

IWIBench turns gradient-free behavioural weight editing into a scored, controlled task: an editor model gets only four tools for reading and writing weights, running the target and inspecting it, and must make ten kinds of semantic change to Gemma 3 4B IT, after which fresh processes compare target success and control retention before and after the patch. Across ten configurations on the same thirty episodes, 6.1-sol at medium reasoning leads with a macro reward of 0.4601 and Astra follows at 0.4356; no editor scores on structured-response defaults, and only 5.6-terra earns positive reward on answer-length control.

arXiv

Physics-informed networks get a coordinate change: CTPINN flattens steep gradients and recovers accuracy on boundary layers

Physics-informed neural networks (PINNs) often lose accuracy on PDEs with sharp gradients, partly because the network struggles to represent high-frequency variation. CTPINN adds a learnable coordinate transformation alongside the solution network, mapping the physical domain to a computational domain where the solution is approximately affine and gradients are more evenly distributed. The explicit construction restores accuracy on boundary-layer problems, and the implicit construction, plugged into PirateNet, SPINN and QRPINN, improves accuracy across several benchmark equations.

Brain voxels get more than one semantic unit: SAIL merges cross-layer sparse features for lower redundancy and higher alignment

Similarity between multimodal large language model representations and human visual cortex shows that the two are alike but not which semantics they share. SAIL recasts voxel interpretation as a correspondence between each voxel and multiple sparse semantic units: it trains a unified cross-layer sparse autoencoder on several model layers, matches each voxel to several units, and compares the semantic similarity of their preferred image sets with optimal transport. Across eight subjects in the Natural Scenes Dataset, joint cross-layer training reduced unit response redundancy and raised semantic similarity over layer-wise training, in both whole cortex and selective regions of interest.

arXiv

Ottoman verse no longer needs a scholar's transliteration: full-line scansion accuracy rises from 26.8% to 77.6% on plain modern Turkish spelling

Ottoman Divan poetry is written in aruz, a quantitative meter that counts each syllable as long or short, and modern Turkish spelling drops the marks that record long vowels, so length has to be inferred from context. A lattice-based hidden Markov model lays out candidate scholarly spellings of each word together with linking and lengthening choices as paths, is trained by EM from each poem's printed meter, and scans 77.6% of held-out lines fully correctly, against 26.8% for a rule-based scanner, 55.0% for a neural tagger trained with the same supervision and 63.6% for Claude Opus 5.5 few-shot on the same 500 lines. The code is open-sourced and the tool is released on the web.

arXiv

Cellular world models' high correlations fall apart: GEARS scores 0.977 globally but only 0.076 on perturbation deltas

On 509 unseen perturbations from the Replogle K562 screen, GEARS reaches a global Pearson correlation of 0.977 between predicted and observed transcriptomes, but only 0.076 once the control baseline is subtracted and the perturbation-induced delta is scored; a trivial baseline that predicts the same mean training delta for every perturbation reaches 0.267. The gap arises because global correlation is dominated by thousands of non-responsive genes, so delta-space evaluation is proposed as the primary benchmark, together with two post-hoc corrections that need no retraining and a retrieval upper bound that localizes the residual.

Salesforce open-sources GIFT-Eval-CTX: feeding promotions and weather to agents cuts forecast error by up to 40.7%

Salesforce AI Research has open-sourced GIFT-Eval-CTX, a benchmark for whether forecasting systems can turn forward-looking business context into accurate numerical predictions. Traditional time-series foundation models take numerical history and predefined variables, so they struggle to use known future events such as heatwaves, road closures or software releases. The benchmark splits context into macro trends and micro events across 10,000 tasks from 20 real-world datasets; adding structured future context cut GPT-5.6 Sol's error by 40.7% and Claude Opus 4.8's by 29.6%.

MongoDB | Blog

MongoDB Research releases LEAF distillation framework: 23M-parameter embedding models keep up to 97% of teacher performance and run retrieval without a GPU

MongoDB Research has released LEAF, a knowledge distillation framework, together with two 23M-parameter text embedding models, mdbr-leaf-ir and mdbr-leaf-mt. State-of-the-art embedding models have grown to hundreds of millions or billions of parameters, typically need GPU servers, and are not compatible with one another, so swapping models means recomputing every document embedding. LEAF aligns only the teacher and student output embeddings; the distilled models retain up to 97% of their teacher's performance while being 5–15× smaller and 7–24× faster, and can run offline on CPU-only servers, IoT and mobile devices.

blog.google

Google adds TPU 8i Max and 8tx to its eighth generation: million-token context and confidential inference in one year

Google has added two systems to its eighth-generation TPU line: TPU 8i Max, aimed at very long context windows and the highest compute density per rack, and TPU 8tx, aimed at secure and confidential inference. The same generation already included TPU 8t for large-scale training and TPU 8i for real-time reasoning, which Google says deliver up to 2.7 times better training performance and 80% better inference price performance than the previous generation. The new systems keep the modular custom-silicon plus open-software-stack approach, rebuilding compute, networking and storage around the chip to ship specialized supercomputers in months rather than years.

bioRxiv

TriStageHLA splits epitope discovery into three stages, lifting immunogenicity AUROC from 60.1% to 81.4%

A team including City University of Hong Kong released TriStageHLA, which splits HLA class I epitope discovery into peptide-only screening, allele-specific binding prediction and immunogenicity prediction in sequence. On held-out immunogenicity data the immunogenicity module reached AUROC 81.4% and AUPRC 73.8%, above ImmuneApp at 70.7%/63.6% and BigMHC-IM at 60.1%/51.5%; the binding module reached AUROC 96.2% and AUPRC 95.2% on combined BA/EL evaluation. In a simulated screen over 300,000 human-proteome background peptides, the screening stage kept 82.4% of true candidate peptides while discarding 87% of background peptides.

arXiv

GenISys lets 20 ship subsystems denoise at once: 9% more low-cost, constraint-satisfying bulk-carrier concepts

GenISys splits early-stage bulk-carrier concept design into 20 subsystems and uses a simultaneous conditional denoising diffusion model so each subsystem reads the others' intermediate states at every reverse step, instead of generating them in a fixed order. In a five-fit confirmation at a fixed 5,000-nautical-mile voyage range, the model returned designs that both satisfied the 187 formulated engineering constraints and met a common low-cost target in 55.70% of generation requests, versus 51.10% for the monolithic model and 47.54% for the sequential model, corresponding to 9.0% and 17.2% more qualifying designs with similar estimated transport costs.

Memorability models flip their scores under noise, while GraphMem tracks human judgments by reading how images relate

After progressive Gaussian noise was added to LaMem images, mainstream memorability models such as ResMem, ViTMem and AMNet estimated lower memorability for initially memorable images and higher memorability for initially forgettable ones, a reversal resembling stochastic resonance. In a continuous recognition task with 88 participants, memorable images proved more resistant to noise while forgettable images declined sharply. The authors built GraphMem, which estimates memorability from an image's neighborhood in a similarity graph rather than from single-image features; it aligned most closely with human data under noise and blur, and after noise training its slope effect reached ρ=0.57 (95% bootstrap CI [0.29, 0.75]), the only model to turn positive.

RNA design moves to discrete diffusion: structure-matched candidates without a folding oracle, and far more sequence variety

RNA inverse folding has long relied on iterative optimization scored by an external folding algorithm, which is sensitive to initialization and prone to local optima. This work defines multinomial diffusion directly over nucleotide sequences, guides denoising with a target secondary structure, and compares a 2D contact-map projection with a purely 1D pairing-aware architecture. On the in-distribution test set, the 2D and 1D models reach median normalized RNAforester similarities of 0.82 and 0.79, while generated sequences stay close to random-sequence diversity.

SEPhIA shares one multi-wavelength laser across spiking neurons: a two-layer optoelectronic network reaches 91.35% on four-class image classification

HPE Labs proposed and validated SEPhIA, an optoelectronic spiking neural network architecture built on microring modulators and multi-wavelength lasers that lets many spiking neurons share one multi-wavelength light source, pushing the laser-per-neuron ratio below one. Prior photonic spiking work focused mostly on individual spiking devices or all-optical laser networks and rarely addressed optical power, crosstalk and footprint together at the architecture level. Using experimentally derived device parameters, a trainable optoelectronic spiking model reached 91.35% test accuracy on four-class spike-encoded image classification, about one percentage point behind a same-size fully connected spiking baseline at 93.65%.

Heterogeneous graph attention stops at path endpoints no more: TAHAN groups intermediate nodes by type and leads DBLP and IMDB classification means

Attention aggregation on heterogeneous graphs has long treated node types as static labels, and metapath aggregation can overlook the semantic contribution of intermediate nodes. TAHAN instead collects neighbors along metapath prefixes, merges them across metapaths and levels by node type, then fuses them with within-type attention followed by across-type attention. On DBLP and IMDB node classification its mean Macro-F1 and Micro-F1 exceed the listed baselines, with both IMDB gains significant after Holm correction; on ACM it falls below SeHGNN.

World Labs

Atlas world model goes real-time: Frameboy streams cloud-GPU frames to the browser at up to 15 fps

Atlas is an autoregressive world model that previously took tens of seconds to minutes to produce a generated video, so users planned camera paths cautiously. The newly released Frameboy research preview serves a highly optimized Atlas variant from cloud GPUs and streams frames to the browser at up to 15 fps, updating the view continuously as the camera moves. The demo can generate scenes from a single image or text caption and retains and improves novel view synthesis from multiple images, but it must run on a powerful cloud GPU server and costs more than local rendering.

Google Cloud's first TPU with hardware-enforced confidential computing runs on AMD's 5th Gen EPYC host CPUs

AMD says its 5th Gen EPYC processors provide the host infrastructure for Google Cloud TPU 8tx, the first cloud TPU system to deliver hardware-enforced confidential computing. Previously cloud TPUs lacked that protection; the design extends AMD Secure Encrypted Virtualization from the CPU to connected accelerators, keeping prompts, model weights and intermediate data encrypted in CPU memory and in transit, with hardware isolation during accelerator execution. The capability targets production inference, fine-tuning and reinforcement learning workloads, and AMD says EPYC is the host CPU choice across more than 10 leading hyperscalers and frontier AI labs.

Molecular traps expose retrosynthesis blind spots: top-20 error rates reach 100% on three selectivity problems

The study introduces "trap molecules," an adversarial evaluation idea in which an AI agent uses reaction SMARTS templates and USPTO reaction records to deliberately design molecules carrying sensitive groups, near-duplicate reactive sites or bulky groups that lure retrosynthesis algorithms into characteristic errors. On 100 chemoselectivity, 100 regioselectivity and 27 steric trap molecules, three algorithms built on different principles, UAlign, SimpRetro and RetroChimera, all showed clear weaknesses in their top-20 predictions, with overall problem rates of 66%–77%, 85%–93% and 92.6%–100% for the three problem types.

arXiv

Retinal screening stops sending every case to review: RetinaGuard accepts about 37% of cases at a 5% unsafe level using evidence-gathering agents and conformal risk control

Multi-disease retinal screening needs a per-image decision on whether an automated call can stand without review. RetinaGuard combines evidence from quality, diagnostic, uncertainty, verification and explanation agents into a learned probability that a decision is unsafe, invokes tools only when their expected value exceeds their cost, and certifies the acceptance threshold with conformal risk control. On the RFMiD test split with the weaker primary model (macro-AUROC 0.896), it captured 119 of 280 unsafe decisions at a 20% referral budget against 88 for lowest-confidence referral; with the stronger model (0.925) the verifier's gain shrank to a few percentage points.

Formation Bio

Formation Bio puts drug diligence inside ARK: Phyla attaches a checkable citation to every claim and records empty searches

Formation Bio has deployed Phyla, a drug-diligence tool invoked automatically by its internal AI system ARK, which queries 27 biomedical sources under one grammar, resolves identifiers once, and attaches a checkable citation to every factual claim. Assembling that evidence previously took teams manually querying sources and harmonizing gene names, while the literature systematically omits negative results. Across research reports for seven target–disease pairs, Phyla cited 99.7% of its statements, versus 86.5%–87.1% for Claude Science and GPT-Rosalind.

arXiv

Two invisible neutrinos no longer force an analytic guess: machine learning cuts top-pair mass resolution by another 30%

In the dilepton channel, two neutrinos escape undetected, so reconstructing top-quark-pair kinematics has long relied on analytic approximations. Using a 7 TeV simulated sample from CMS Open Data, researchers first refined the loose kinematic reconstruction into LKRv3, then trained a residual multilayer perceptron and a conditional normalizing flow to regress the top-pair four-momenta directly from visible particles; relative to LKRv3, the two networks improve the resolution of the invariant mass, transverse momentum and rapidity by about 30%, 20% and 15%, reaching 30 GeV invariant-mass resolution near the production threshold.

arXiv

Discount-curve fits must survive no-arbitrage drift: only the Segal–Bargmann kernel family keeps kernel ridge regression states drift-invariant

Discount curves are usually estimated day by day with kernel ridge regression, but a good daily fit does not guarantee that the estimated curves can serve as states of a continuous-time arbitrage-free model. This work asks whether the finite-dimensional hypothesis space of kernel ridge regression is invariant under the risk-neutral drift of the discount curve for every grid of cash flow dates. Apart from kernels whose Hilbert space has dimension at most two, only the family built from the Segal–Bargmann kernel qualifies; for that kernel the estimate is an affine combination of flat discount curves, and the drift-invariant subspaces that allow dimension reduction correspond to sub-grids of the cash flow dates.

AstraZeneca

AstraZeneca and Oracle sign a non-binding AI collaboration, with a first programme on hypertension care and trial recruitment in Abu Dhabi

AstraZeneca and Oracle Health and Life Sciences announced a global AI collaboration combining AstraZeneca's clinical development and regulatory expertise with Oracle's real-world data, cloud infrastructure and AI-enabled clinical capabilities, aiming to speed clinical research and bring evidence into care workflows. The stated early areas include clinical trial recruitment, earlier diagnosis, drug-safety monitoring and real-world evidence across a medicine's lifecycle, spanning oncology, cardiovascular, renal and metabolic, respiratory and immunology, and rare disease. The first programme focuses on hypertension care and clinical research in Abu Dhabi with healthcare company M42; the companies signed a non-binding term sheet and disclosed no financials.

arXiv

An independent LLM judge audits PET depolymerisation records: 67.5% of 3,942 pass as written, with fixes concentrated in catalyst and solvent mass

Experimental data on homogeneous catalytic PET depolymerisation is scattered across prose, tables and supporting information, and manual consolidation does not scale. This pipeline has an extractor tag each record with the unique identifiers of its source text chunks, then an independent LLM judge reads the full paper, checks each field and proposes cited corrections. On 295 hand-curated ionic-liquid PET glycolysis experiments the judge agreed with human evaluation on 85.7% of reviewed records; across 3,942 records from 561 papers it accepted 67.5% as written, with corrections concentrated in quantitative fields such as catalyst and solvent mass.

arXiv

A small transformer learns the language of an infinite Coxeter group, and its attention hints at two word-theory propositions proved by hand

A small transformer with a single attention layer was trained to predict the left and right descent sets of elements of the infinite Coxeter group Ã₂, meaning the possible first and last letters of minimal-length words. Test accuracy improved as training data moved from random words to reduced words to ShortLex normal-form words: the random-word and reduced-word datasets each began deteriorating at some length, while the set of all 1,998 ShortLex words of length at most 36 never deteriorated. From the trained model's attention patterns, the researchers formulated and independently proved two word-theory propositions about right and left descent sets.

bioRxiv

Paired transcriptome and 3D genome from one cell: scHiR fuses two sparse modalities into a single cell embedding

Technologies that simultaneously sequence single-cell transcriptome and 3D genome already yield paired measurements from the same cell, but the two modalities differ sharply in noise, scale and biological meaning, and were previously analyzed separately with latent spaces that need not align. scHiR maps gene expression and chromatin contact matrices into one hyperspherical latent space through modality-specific encoders and reconstructs both signals. On paired data from HiRES, GAGE-seq and LiMCA, the joint embedding matched or exceeded single-omics methods in clustering, and on mouse main olfactory epithelium it raised the Spearman correlation between pseudotime and developmental stage from 0.357 and 0.205 for single-omics embeddings to 0.517.

arXiv

Autonomous-driving tests stop following a fixed script: a scenario orchestrator rewrites other vehicles in real time and fully realizes the intended interaction in all six scenario families

Autonomous-driving policies react in closed loop, so a scenario scripted with fixed routes often drifts away from the interaction it was meant to stage, a problem called closed-loop drift. A scenario orchestrator continuously monitors the joint traffic state and adapts non-ego actors through re-timing, re-routing and role reassignment, solving a constrained optimization at each step so the test intent survives while interventions stay limited and traffic stays feasible. In the CARLA simulator across six scenario families and six ego policies, the method fully realizes the intended interaction in every scenario family, while baselines such as ProSim, LASER and OSC2Runner mostly satisfy only the two easiest scenes.

arXiv

SRAM design stops fixing the bitcell first: OpenYieldV2 optimizes 6T and 10T together, raising hypervolume by up to 17.3%

The open-source SRAM design tool OpenYieldV2 turns bitcell topology from a fixed input into an optimizable variable searched jointly with transistor sizing and threshold-voltage assignment. Previously OpenRAM generated layouts without optimizing, and OpenYield's high-fidelity optimization covered only a fixed 6T cell. OpenYieldV2 compiles 6T and 10T macros under identical high-fidelity conditions, predicts performance with a few-shot TabPFN surrogate, and searches with a coarse-to-refined multi-objective optimizer; in mixed-topology scenarios its hypervolume improves by up to 17.3% over the strongest single-topology baseline.

MongoDB | Blog

Vercel AI SDK gets persistent memory: MongoDB's open-source integration stores chats, facts and events in Atlas

MongoDB released and open-sourced an integration that turns MongoDB Atlas into the persistent memory store for AI applications and agents built with the Vercel AI SDK. The SDK itself ships no database, so an application previously started every conversation with no knowledge of the last one, and developers had to design schemas, write cleanup jobs and set up vector search themselves. The integration sorts memories into session, semantic, procedural, episodic and scratchpad types with separate retention policies, and creates vector indexes automatically while detecting embedding dimensions at startup.

MongoDB | Blog

MongoDB ships Atlas App Connections: AI coding tools reach Atlas in one click, without shared long-lived credentials

MongoDB released Atlas App Connections, which lets AI coding tools connect to an Atlas account with a single click of authorization. Until now the only route was sharing long-lived service account credentials, which slowed builders and left administrators managing a security risk they were reluctant to accept, so some organizations avoided third-party integrations. Built on OAuth 2.1, it lets AI clients act on the user's behalf through the Atlas MCP Server, scoped to the user's existing permissions, revocable at any time, and off by default for existing organizations until an administrator opts in.

Encrypted traffic classification stops retraining per task: ProtoSPM freezes one encoder across three label spaces

Encrypted traffic classification has required retraining the whole encoder whenever application or website labels change, and fine-tuned scores mix in downstream supervised learning. ProtoSPM arranges each bidirectional flow as a matrix of 51 protocol fields and pretrains by masked reconstruction on unlabeled backbone traffic, then freezes the encoder and trains only per-task heads. On ISCX-VPN-app, TLS-120 and CipherSpectrum, the complete 12.03M-parameter model reaches macro-averaged F1 of 61.29%, 67.98% and 71.28%, 2.13 to 26.65 points above a same-input, near-parameter-matched plain field Transformer.

MongoDB | Blog

MongoDB Atlas ships Automated Embedding: re-embed only when an indexed field changes, so agents stop retrieving stale vectors

MongoDB Atlas has moved Automated Embedding into Public Preview, so developers no longer have to run a parallel embedding pipeline to search their own data. Previously an edited document left a stale vector behind, and the fix was a human-written, human-scheduled backfill job, with hours rather than seconds between a data change and the index reflecting it; the Atlas version uses field-level delta detection to re-embed only when an indexed field actually changes, and splits index builds and live queries onto two inference mechanisms. On storage it offers configurable quantization, with scalar quantization roughly 4x smaller than float32 by default and binary quantization roughly 32x smaller.

AMD Newsroom

Google Cloud's first TPU with hardware-enforced confidential computing runs on 5th Gen AMD EPYC hosts

AMD says its 5th Gen EPYC processors provide the host infrastructure for Google Cloud TPU 8tx, the first cloud TPU system to deliver hardware-enforced confidential computing. Previously, Google Cloud's confidential computing portfolio covered CPU-side workloads such as Confidential VMs, Confidential GKE and Confidential Space, not confidential AI acceleration. TPU 8tx uses EPYC's Secure Encrypted Virtualization to extend protection to connected accelerators, keeping prompts, model weights and intermediate data encrypted in CPU memory and in transit, with hardware isolation during accelerator execution, for enterprise inference, fine-tuning and reinforcement learning workloads.

arXiv

EEG fatigue detection stops reading band power alone: LBSNet lets learnable spectral prototypes set each window's weight

EEG fatigue detection has treated multi-band modeling and temporal weighting as separate concerns, without defining how the spectral structure inside a window should shape that window's contribution. LBSNet encodes each window's relative cross-band activity as a normalized descriptor, softly matches it to learnable spectral prototypes, and combines the assignments with prototype importance to weight power aggregation. In subject-independent experiments on SEED-VIG and SADT it beats seven baselines on accuracy and F1 while using the fewest parameters and multiply-accumulate operations among the compared models.

MongoDB | Blog

MongoDB Atlas plugs into Microsoft 365 Copilot: live operational records answer questions without a data migration

MongoDB has released a federated Copilot connector for MongoDB Atlas, now generally available, letting users ask Microsoft 365 Copilot questions about live Atlas data. Previously such answers lived in operational applications built on Atlas while the questions were asked in everyday productivity tools, or relied on a static copy of the data. The connector queries Atlas on demand through MongoDB's managed remote MCP server, with no migration or indexed copy, and each query runs as the signed-in user under existing Atlas permissions.

CAS Connections lands in Microsoft Copilot, letting chemists check CAS Registry Numbers and structures while drafting reports

CAS, a division of the American Chemical Society, announced that its CAS Connections connector is now live in Microsoft Copilot, giving Copilot users direct access to CAS Content Collection and to CAS Newton, a science-focused AI agent. Previously, R&D teams in pharma, life sciences and chemistry had to look for trusted scientific information in dedicated tools outside Copilot. Jointly developed by CAS and Microsoft, the connector embeds more than 150 years of expert-indexed CAS knowledge into everyday writing, analysis and collaboration workflows, for example checking a compound's CAS Registry Number and chemical structure in Word or asking in Teams whether a substance appears in patent literature.

MongoDB | Blog

MongoDB and Google ADK connect: agent sessions and memory no longer need a separate store

MongoDB released an integration with Google ADK that gives agent state durable memory. Previously developers still had to build their own tooling for a data store that could retain agent context over time. The integration uses MongoDbSessionService to persist sessions, events, and application-, user-, and session-scoped state to MongoDB, and MongoDBMemoryService to ingest session events into collections and recall memories through keyword matching; retrieval reuses MongoDB vector search combined with full-text search. It supports MongoDB Atlas and self-managed MongoDB 8.0+ deployments.

MongoDB | Blog

MongoDB moves embedding models inside the database: pick one at index time, and vectors follow writes, updates and queries

MongoDB has released Automated Embedding in MongoDB Vector Search as a public preview in Community Edition: a developer chooses an embedding model while creating a vector search index, and text vectors are generated and kept in sync during initial data sync, document inserts and updates, and query processing. Previously developers called external embedding providers from application code before inserting data or running a vector query, and built custom pipelines to keep source data and vectors aligned on every insert, update or delete, plus an extra API call per query. The feature ships Voyage AI's voyage-4-large, voyage-4, voyage-4-lite and voyage-code-3 models and uses asynchronous dynamic batching that adjusts batch size to document shape.

Yidu Tech releases TCM evidence agent Xiaohuangqi: answers traceable sentence by sentence, 8,000+ terms translated

At the 2026 World Conference on Traditional Medicine, Yidu Tech released Xiaohuangqi, a traditional Chinese medicine evidence agent that supports classic-text search, guideline and literature tracing, syndrome differentiation assistance, formula lookup and terminology translation. TCM knowledge is complex, terminologically distinctive and spread across many sources, so the system grounds answers in evidence and traces each sentence to its source to reduce the risk of AI hallucination. Its knowledge base draws on People's Medical Publishing House TCM knowledge and more than 8,000 international TCM terms; Yidu ZhiXun and the Yidu clinical assistant are reported in use at more than 40 well-known hospitals nationwide.