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# Causal Inference

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  1. arXiv

    Generalizing JTPA job-training effects to a national target: TRACE narrows the confidence interval by 60% and says whether baseline mismatch or follow-up loss is to blame

    Generalizing randomized-trial findings to a broader target population can yield distorted estimates when the trial sample is misaligned with that population. TRACE decomposes the asymptotic variance of the efficient generalizability estimator into a baseline-mismatch channel and a censoring channel, then uses a tree search to localize underrepresented subgroups and attribute each to its mechanism. In a case study generalizing the JTPA Study to U.S. JTPA-eligible adults, restricting to reliably generalizable subgroups narrows the 95% confidence interval for the refined estimand by 60%.

  2. Nature Genetics

    Childhood brain tumor prognosis moves past subgroup labels: MANTIS draws 10-year individual survival curves from methylation, reaching c-index 0.80

    Treating childhood medulloblastoma and ependymoma means trading recurrence risk against the long-term side effects of radiotherapy, yet current clinical indicators and molecular subgroups only give group-level risk. MANTIS takes genome-wide DNA methylation array data plus gene-level copy-number variation and uses a neural network to output individualized 10-year survival probability curves, reaching a c-index as high as 0.80 ± 0.07 in independent clinical trial cohorts, above current clinical indicators and subgroup-only models. An extension of the same framework flags about 60% of average-risk medulloblastoma patients who showed no significant survival disadvantage (P = 0.683) under lower-dose craniospinal irradiation.

  3. arXiv

    SCOUT folds 19 side effects into one learned outcome and flags lithium effects in bipolar observational data

    SCOUT compresses high-dimensional, noisy baseline variables into at most two adjustment scores and learns a treatment-responsive composite outcome inside that low-dimensional space, yielding average and heterogeneous treatment-effect estimates from observational data. Among 481 STEP-BD participants with bipolar disorder, the learned composite put its largest weights on nocturia, tremor, polyuria and nausea/vomiting, with a mean effect of 0.250 and Holm-adjusted values of 0.0026 for the average effect and 0.033 for heterogeneity. On synthetic and semi-synthetic data its average-effect error was close to CV-TMLE while CATE error for its score-indexed target was substantially lower.

  4. arXiv

    A causal answer to whether an AI agent should be reviewed mid-task: randomized interventions inside one trajectory show effects swing by action and state

    Agent evaluation has relied on fixed benchmarks that report task success or failure but cannot say whether reviewing or steering an agent mid-trajectory is worth it at deployment. Researchers bring micro-randomized trials into agent trajectories, assigning review or direct execution with equal probability at each eligible decision, then estimate causal effects with augmented inverse probability weighting and structural nested mean models. On τ-bench Retail, ToolSandbox and ImpossibleBench, review effects vary substantially across tool-call types and agent states, and the same data yield decision-group risk rankings.

  5. Ataraxis AI

    CTX stops asking how likely recurrence is and predicts who gains from chemotherapy, catching benefit a genomic score missed in TAILORx

    Ataraxis AI released CTX, a causal multi-modal model that predicts the five-year recurrence-free gain from adding chemotherapy for HR+/HER2− breast cancer patients from routine pathology slides and clinical variables, rather than recurrence risk alone. Across 1,994 held-out patients from five cohorts in three countries, the treatment-by-biomarker interaction for CTX-τ was significant (p=2.1×10⁻⁶), and in the held-out phase 3 trials TAILORx and UNIRAD it separated patients who benefit from chemotherapy from those who may need treatment escalation.

  6. Printed PLA gets a causal chain from clay exfoliation to layer bonding and voids, reaching 62.5 MPa at 2 wt.% clay

    Strength in fused-filament PLA parts modified with organo-modified montmorillonite depends jointly on clay exfoliation, melt rheology, interlayer thermal bonding and pore morphology, while earlier optimization mapped filler fraction and print parameters directly to mechanical properties. C³M-OMMT Twin chains clay exfoliation and rheology state, layer-by-layer thermal history, defect-interface graphs, causal mechanical response, Bayesian Pareto optimization and experimental validation. Across 0 to 5 wt.% clay and nozzle temperatures from 195 to 225 °C, its optimum is about 2 wt.% clay, 215 °C, 0.15 mm layer height and 35 mm/s, giving 62.5 MPa tensile strength, 94.1 MPa flexural strength and 2.18% void fraction.

  7. arXiv

    Causal agents get graded on experiments, not answers: ACED-Bench hides the graph and spreads 180 hard tasks across models

    ACED-Bench separates natural-language scientific scenarios from hidden probabilistic graphical models so agents must choose observational or interventional experiments within a four-turn budget and commit to causal answers, producing wide spread across models and agent designs on 180 hard tasks while strong agents near ceiling on a 150-question qualification check.

  8. A mechanism-informed ML framework predicts polymeric long-acting injectable release with XGBoost (test R² = 0.9774) and finds predictive importance nearly uncorrelated with intervention effects (r = 0.132 and −0.021)

    The study builds a mechanism-informed machine learning framework that chains a pharmaceutical-knowledge-driven directed acyclic graph, causal structure discovery (PC, NOTEARS, DirectLiNGAM), XGBoost release prediction, explainable AI (SHAP), ATE/CATE intervention-effect estimation, and counterfactual formulation analysis; on a public dataset of 181 release profiles, 3,783 fractional release measurements, and 43 drug-polymer pairs, XGBoost reached test R² = 0.9774, RMSE = 0.0491, and MAE = 0.0339, and correlation and SHAP importance agreed strongly (r = 0.761) while both agreed poorly with intervention-effect estimates (r = 0.132 and −0.021), indicating that variables useful for prediction differ from those that can be manipulated.

  9. A PhD thesis proposes three methodological innovations and a design framework for bringing causal machine learning into clinical practice, testing continuous treatment models on a physiotherapy dosage case

    This PhD thesis addresses how causal machine learning can be translated into real-world clinical practice along three lines: for binary treatment effect estimation in clinical contexts it identifies eight key decision points that directly influence treatment effect estimates and proposes a structured framework for designing causal models in clinical settings; for the difficulty of verifying counterfactual predictions it proposes a novel method that grounds average model predictions in a group-level quantity that can be empirically verified using randomized or real-world clinical trial data, and shows that a model with a lower counterfactual error bound can be constructed and that information bottleneck regularization improves treatment effect estimation; for continuous causal machine learn

  10. bioRxiv

    Corpus-wide causality: Algorithm design & application for aggregating gene-disease causal evidence

    This work develops a method to infer a Corpus-Wide Causal Score (CWCS) for a gene-disease pair by integrating network-based causal signals in a gene regulatory network (CWCS-Net) with corpus-wide literature evidence from PubMed abstracts quantified by a newly developed Truth Discovery algorithm (CWCS-TD), achieving a causal class F1 score of 0.600 across ten diseases using OMIM as an external expert-curated reference, outperforming GPT-4o (0.505) and MMed-Llama 3 (0.522).

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