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AI and science frontiers · 2026-11-07

Only content delivered through the publication boundary on this date is included.

Sealed edition v1

Ataraxis AI

CTX stops asking how likely recurrence is and predicts who gains from chemotherapy, catching benefit a genomic score missed in TAILORx

Ataraxis AI released CTX, a causal multi-modal model that predicts the five-year recurrence-free gain from adding chemotherapy for HR+/HER2− breast cancer patients from routine pathology slides and clinical variables, rather than recurrence risk alone. Across 1,994 held-out patients from five cohorts in three countries, the treatment-by-biomarker interaction for CTX-τ was significant (p=2.1×10⁻⁶), and in the held-out phase 3 trials TAILORx and UNIRAD it separated patients who benefit from chemotherapy from those who may need treatment escalation.

bioRxiv

Flip the strand and DNA language models change their answer; MirrorDNA cuts both strands at mirrored points to give one prediction

DNA language models usually tokenize, train and test on one strand, so a sequence and its reverse complement can get different predictions. MirrorDNA uses a symmetric router that cuts both strands at mirrored positions and proves the whole model is equivariant to the reverse complement. On 12 strand-symmetric Nucleotide Transformer tasks it reaches an MCC of 0.491 on both strands, against 0.152, 0.187 and 0.080 for NT-v2, DNABERT-2 and HyenaDNA.

bioRxiv

CytoBridge turns sparse spatial transcriptomics snapshots into virtual tissues, writing cell–cell interaction into the dynamics

Time-series spatial transcriptomics measures each tissue section once, so how cells migrate, proliferate and influence one another can only be inferred indirectly. CytoBridge learns continuous population evolution in a joint space of transcriptomic state and spatial coordinates, splitting velocity into an interaction term estimated from spatial neighborhoods and ligand–receptor priors and an intrinsic-context term, while allowing cell numbers to grow or shrink. Across five datasets on three spatial transcriptomics platforms it generates unmeasured intermediate stages; in a leave-one-stage-out benchmark it had the lowest Sliced-W2 in 12 of 33 combinations, more than any other method or control.

Why deep-learning runs resist reproduction: interwoven basins leave outcomes unpredictable no matter how precise the initialization

Deep-learning training outcomes are hard to reproduce, usually blamed on random seeds, batch order and other external noise. This work treats training as a dynamical system in parameter space and proposes that the basins leading to different solutions interleave arbitrarily closely, forming a riddled-basin geometry. In a minimal two-layer model this yields a near-zero uncertainty exponent: initialization precision must improve by almost 24 orders of magnitude to halve the fraction of disagreeing outcomes, and across roughly 500,000 deep-network trainings the analogous parameter-space and function-space exponents are also near zero.

vLLM Blog

Async RL stops being dragged down by kernel mismatch: REINFORCE Zero keeps learning at policy lag 64 and reaches 2.40× synchronous training-step throughput

Asynchronous reinforcement learning runs rollout and training at the same time, but the learner trains on samples from older weights, and importance sampling alone had not stopped the drift. REINFORCE Zero, from NVIDIA Research and Inferact, first aligns the rollout engine and trainer so both compute bit-identical per-token logprobs at the same weights, then handles the remaining weight lag with unclipped token-level importance sampling. On 16 GPUs over 12K updates it reaches 2.40× the training-step throughput of synchronous training with aligned kernels (68.55 versus 164.77 hours) at comparable quality, and Qwen3-4B with Python tools trains at lag 64 through 5,000 updates, with mean reward rising from 0.287 to about 0.78.

bioRxiv

Brieno turns raw nanopore current into discrete tokens, then pretrains a Transformer that reads methylation with few labels

Raw nanopore current is continuous and has no native token vocabulary, and prior analyses built a separate model per task. Brieno first compresses the signal into discrete tokens with residual vector quantization, then pretrains a Transformer by masked-token prediction on 118 million reads, so frozen or fine-tuned features serve species identification, barcode demultiplexing, basecalling and methylation detection. On held-out runs, fine-tuned Brieno reached a read-level CpG 5mC AUROC of 0.978, above the 0.975 of Dorado's dedicated 5mCG model.

bioRxiv

One language model reads protein and DNA together: untrained scoring recovers MutH substrate shifts and flags 6 of 82 variants for better editing

PDLM concatenates a protein sequence and its DNA partner into one input and applies masked language modeling with a shared Transformer, so a DNA sequence is scored in the context of the protein paired with it. On a held-out test set of 2,558 protein–DNA pairs, PDLM-150M-domain reached an AUROC of 0.940 and an AUPRC of 0.903 for pair classification, against 0.823 and 0.683 for the strongest independent dual-encoder baseline, ESM2-150M plus DNABERT-2. Zero-shot conditional scoring recovered the known direction in which the MutH E91A/F94A variant extends preference to GATA, GATG and GATT, and 6 of the 82 variants prioritized on that basis showed significantly higher GACA editing than the parent.

NVIDIA opens four Cosmos 3 checkpoints so driving and dual-arm robots can act and see the next frame

NVIDIA's Cosmos world-model development platform adds four open-weight checkpoints, each post-trained from Cosmos 3 Nano with 16B trainable parameters, covering multi-view driving data generation, synchronized camera-LiDAR streaming driving simulation, photorealistic rendering from simulator controls, and video prediction from dual-arm robot actions. The checkpoints ship with a four-stage post-training recipe under OpenMDW1.1, which permits commercial and non-commercial use; NVIDIA also states that measuring where these models faithfully support policy learning and evaluation, and where their limits lie, remains ahead.

arXiv

Physics agents meet whole research projects: 56 real tasks, and the best setup passes only 46 of 168 runs

FrontierPhysics replaces fixed physics questions and paper reproduction with given solutions by 56 end-to-end tasks that 42 physicists built from their own research, spanning nine areas of theoretical, computational and experimental physics. An agent receives only a high-level prompt like a principal investigator's brief, then must review the literature, set a plan, run the research, and deliver both deterministically checkable numerical outputs and a manuscript. Across 22 models in 26 configurations, no configuration passes more than 46 of its 168 rollouts, and manual review of trajectories traces the main weaknesses to insufficiently rigorous reasoning and limited expert intuition rather than gaps in physics knowledge.

bioRxiv

Flowing cells get organelle-level eyes: three structured-light frames plus self-supervised reconstruction reach about 118 nm at up to roughly 720 cells per second

Super-resolution imaging flow cytometry (SR-IFC) brings structured-illumination microscopy into a continuous microfluidic stream: each cell yields only three phase-shifted frames, physical modulation sharpens the flow axis, and a network trained solely on the imaged sample's own data infers the missing transverse detail. On 100 nm fluorescent beads, SR-IFC reached about 118 nm along the flow axis and 110 nm across it, versus 222 to 227 nm for wide-field imaging of the same beads; with a 2048 × 320 pixel readout, the theoretical throughput ceiling is about 720 cells per second.

arXiv

Dory1.0-4B moves inference compute into a looped block: one checkpoint lifts its 12-benchmark average from 35.2 to 40.6

Dory1.0-4B is a 4-billion-parameter looped language model whose single checkpoint varies how many times a shared recurrent block runs at inference, letting one model serve different compute budgets. It was pretrained on 6 trillion tokens, the first 4.5 trillion in NVFP4, then extended to a 256K context and post-trained with SFT and RLVR. On the equal-weight average of 12 benchmarks it rises from 35.2 at one loop to 39.7 at two and 40.6 at four, and with two or more loops it beats Qwen3.5-9B, Gemma 4 12B and Gemma 4 26B-A4B on that average.

bioRxiv

BLOOM turns sparse developmental atlases into a queryable virtual embryo, topping gene and cell correlation on all three mouse atlases

BLOOM frames transcriptomic virtual-embryo modeling as conditional generation: given an observed window of cell populations, a requested developmental stage and cell-state information, it generates the expression distribution at that stage. Pseudo-trajectories link independently sampled populations, while developmental age, cell-identity hierarchy, anatomical context, gene programmes and transcription-factor–target networks condition both a Gaussian base and a flow-matching generator. Across prenatal, visual-cortex and multi-organ endothelial mouse single-cell atlases, BLOOM ranks first for stage-averaged gene and cell correlations against 22 time-series forecasting baselines.

bioRxiv

VenusGenome reads microbial genomes as context: frozen representations lead nine of eleven primary metrics

A microbial gene's function depends on the protein it encodes and on where that gene sits and what it neighbors, and encoding proteins one at a time discards that organization. VenusGenome takes frozen protein embeddings as gene inputs and uses a 75% masking autoencoder that forces reconstruction from sparse genomic context, with attention that separates within-contig from cross-contig relationships and encodes relative strand orientation. Pretrained on more than 1.7 million microbial genome assemblies, the frozen encoder reaches the highest mean performance among evaluated models on nine of eleven primary metrics, with zero-shot PPI genome-macro Spearman correlation of 0.300 versus 0.201 for BacFormer.

arXiv

Open multi-agent RL gets an axiomatic footing: Shapley's three axioms now shape each agent's value function

In open multi-agent systems where only some agents are controllable, individual value functions previously had no structured basis for learning. Researchers treat the Shapley axioms of efficiency, symmetry and linearity as structural constraints during learning rather than constructing values from the explicit formula, yielding two generic templates, Shapley Machine and Banzhaf Machine. On MPE-PP and SMAC tasks adapted to the n-agent ad hoc teamwork (NAHT) setting, instantiating them on IPPO and POAM generally improved learning efficiency and generalisation to unseen agent types and conventions, though the efficiency axiom weakened generalisation to unseen agent types in some cases.

Generative models can skip step-by-step constraint checks: HardFlow enforces hard limits only at the output, clearing robot and image-editing tasks

MIT researchers introduced HardFlow, which recasts hard-constrained generation as a trajectory-optimization problem and enforces safety, physical or task requirements only on the final output rather than on every intermediate sampling step. The common alternative, projection-based sampling, repeatedly pulls intermediate samples back into the feasible region throughout generation, which can keep the model from reaching a better final solution. Across robotic manipulation, maze navigation and text-guided image editing, HardFlow achieved perfect constraint satisfaction and consistently beat baselines on solution quality, with computation time comparable to or lower than most competing methods.

arXiv

Two SAE latents, one feature? A single energy-weighted transport plan now prices whole-dictionary disagreement and locates it latent by latent

Comparing two sparse autoencoders (SAEs, dictionaries that decompose model activations into sparse learned components) requires answering three things at once: how much two whole dictionaries differ, which latents account for that difference, and how much is sampling noise from finite documents. One energy-weighted optimal-transport plan connects them: its cost is the dictionary-level discrepancy, the cost decomposes exactly into latent contributions, and transported fractions describe how each latent's activation energy is allocated across counterparts, with joint asymptotic confidence intervals. Across four language models it locates differences between SAEs trained on identical data with different seeds and separates topic-dependent changes into a weight term and a cost-matrix term.

RNAflash splits RNA homology search into retrieval and structure-aware alignment, running over 100 times faster than Infernal on RNAcentral

RNA homology search has long traded sensitivity against speed: sequence methods are fast but miss low-identity homologs, while covariance models are sensitive but costly. RNAflash splits the task in two, first retrieving candidates from a pre-encoded database with a contrastively trained RNA language-model encoder, then reranking and aligning them with a cross-encoder guided by predicted secondary structure. On held-out Rfam families its retrieval recall exceeds sequence-based methods; on RNAcentral the resulting alignments show stronger coupling and covariation signals than sequence-based methods and Infernal, while search and alignment run 3.7-fold faster than non-iterative Riboseek and over 100-fold faster than Infernal and RNAcmap.

bioRxiv

Neighbor transcripts leak into spatial cells: DisCell splits spillover from niche response and gives each finding a breakdown point

Single-cell spatial transcriptomics counts neighboring cells' transcripts inside a cell, and this spillover and a cell's real response to its niche both tie expression to surroundings, so counts alone cannot separate them. DisCell models intrinsic state, niche response and spillover jointly, refits over a range of spillover fractions, and assigns each finding a breakdown point. On ovarian and lung sections its intrinsic state keeps more cell-cycle information than any competing method holding as little neighborhood information, and a published esophageal EMT finding survives the modeled spillover range.

Sparse reaction data gets a closed loop: active learning picks the experiments, and geometric GNNs call every borylation site on unseen substrates

Late-stage functionalization in medicinal chemistry is limited by scarce reaction data, especially when several similar C–H bonds compete for borylation. A Roche and ETH team used an XGBoost-ensemble active learning loop to pick 50 previously unreported substrates from a 22,253-molecule pool across three rounds of high-throughput experiments, expanding C–H borylation data to 6,865 reactions over 568 substrates. Geometric graph neural networks trained on that set beat XGBoost in most cases on random, Butina and Bemis–Murcko scaffold splits, and in a prospective test on ten unseen substrates with N-heteroaryl motifs the top predicted site matched experiment in all cases.

bioRxiv

Fox skips tree building for host-symbiont coevolution: reading paired alignments directly, it runs over three orders of magnitude faster than an ABC baseline

Estimating the frequencies of host-symbiont coevolution events used to require reconstructing a host tree and then reconciling the symbiont tree against it, so tree-inference error propagated into the result. Fox instead uses a transformer to output the relative frequencies of cospeciation, host switching, loss and duplication directly from the host and symbiont multiple sequence alignments and their mapping, paying the simulation cost once at training time and processing each new system in a single forward pass. On the independent simulator treeducken, Fox reached a mean absolute error of 0.060 on the 92 datasets AmoCoala completed, against 0.131 for AmoCoala, while running more than three orders of magnitude faster.

arXiv

A biomedical agent can keep the right verdict while citing different evidence: BioAgent-DF restores tool values at their original coordinates to trace the swap

BioAgent-DF swaps reference and candidate values saved at the same scientific computation site back at their original coordinates, then lets a biomedical agent continue on healthy hardware, to audit whether a numerical fault changed what it reads and cites. Across eight SciFact batches, Qwen3.5-4B shows repeatable citation changes in three capture–claim combinations and Gemma 3 4B IT shows repeatable read and citation changes in four, covering two claims; full restoration recovers the reference evidence sets while verdicts stay unchanged. In hERG cardiac-safety screening, silent numerical faults changed testing decisions while the fixed-budget shortlist kept the same number of compounds labeled as blockers.

arXiv

world2vec learns world models without rewards: an order of magnitude fewer parameters, and systems read out across 71 attractors

world2vec learns, from observations and actions alone and without reward information, an encoder that maps physical state into latent coordinates plus latent dynamics describing how that state evolves. It requires the encoded future to match what rolling out the latent dynamics predicts, a condition computable from observations and actions alone. On Pendulum, Reacher and Cartpole it performs pixel-based continuous control with at least an order of magnitude fewer parameters than DreamerV3, TD-MPC2 and LeWM, and identifies systems across a benchmark of 71 attractors.

arXiv

Speculative decoding pays off more than predicted on sparse MoE models: fine-grained models peak near batch size 1

Prior cost models estimated speculative decoding from the expert-weight bytes activated during verification, predicting a concave speedup curve with limited gains at low batch size for sparse MoE targets. Across 10 sparse MoE models from 30B to 1T parameters and 8 to 512 experts, fine-grained models instead often peak near batch size 1. Two effects explain it: routing overlap across adjacent draft positions cuts the unique experts loaded during verification by 21% to 34% relative to an independence baseline, and GPU execution dynamics, namely bandwidth-utilization gaps between MoE and attention kernels plus L2 reuse, decouple runtime from expert bytes.

arXiv

Mobile robots skip the prebuilt semantic map: Feijoa grounds instructions at query time and hits 94.2% exact match on 103 queries

When a mobile manipulator is told to put the toys away in the toy box, it usually relies on a task-agnostic semantic map that may lack the attributes, affordances or concepts the instruction needs. Feijoa has a language-model agent query a posed RGB-D scan after the instruction arrives, inspect the returned candidates and rewrite its queries until the reference resolves. On 103 open-ended grounding queries it reaches 94.2% exact match, against 68.0% for the best prebuilt representation, TextMap; on 50 real Spot trials it completes 35 tasks, 17 of them after recovering from a failed tool call or verification check.

OpenAI News

GPT-6 turns answers into tappable interfaces: ChatGPT builds charts, buttons and forms as it generates

OpenAI is bringing GPT-6 to the more than 1.2 billion people who use ChatGPT each week, and letting the model build interactive interfaces directly into its answers. Previously every question was forced into the same conversational format, with mostly text replies; Intelligent UI lets the model choose text, graphics, buttons, forms or charts for each question, using a library of streamable components and a compiler that renders the interface as it is generated. OpenAI says GPT-6 Instant begins answering questions that need web search 44% sooner on average than GPT-5.6 Instant.

arXiv

Risk-controlled candidate screening drops conformal p-values: UNEC calibrates the cutoff directly, taking about 1.3 seconds per repetition over the full simulation grid versus 35 to 37 for SCoRE

Machine learning screens far more candidates than can be experimentally validated, so selection must control risk before validation. UNEC normalizes predictive margins by local uncertainty and calibrates the selection cutoff directly on held-out losses, without building conformal p- or e-values, and supports general bounded losses and observation-specific thresholds. On solubility, toxicity and lipophilicity screening it holds risk-power trade-offs competitive with conformal selection, the NP method and SCoRE variants; in simulation the full grid took about 1.3 seconds per repetition versus 35 to 37 seconds for SCoRE.

Dropless MoE training in JAX gets a tenfold lift: DeepSeek-V3 671B holds 97% scaling efficiency at 1,024 GPUs

NVIDIA wired Transformer Engine's MoE optimizations into the JAX training stack so every token reaches its selected expert, with no dropping and no padding. An unoptimized baseline training DeepSeek-V3 on GB300 reached only 103 TFLOPS/GPU, with inter-GPU communication consuming 84% of accumulated kernel time; grouped GEMM, MXFP8 grouped quantization and fused expert-parallel dispatch and combine raised that to 1,068 TFLOPS/GPU, about a tenfold end-to-end throughput gain, and the stack sustained 97% efficiency at 1,024 GPUs.

GrnPFN learns from simulated gene networks: it predicts transcriptional interactions before any combination is measured

Combinatorial perturbation screens grow quadratically in pairs, so most combinations are never measured, yet combined transcriptional responses often depart from the sum of the two single effects. GrnPFN is pretrained on simulated screens generated from random gene-regulatory networks to predict that nonadditive residual directly, then incorporates measured pairs through in-context learning without retraining. Across five single-cell screens, with no measured pairs in the target screen it reached a pooled cosine similarity 0.049 higher than gradient boosting trained on other screens (97.5% CI, 0.038–0.060); as measured pairs accumulated, kernel ridge fitted to the same pairs caught up.

arXiv

MoE experts don't sort by domain label: an SAE splits each feature's activation by expert, separating Java from front-end code

Researchers at ByteDance Seed and Shanghai University of Finance and Economics trained a sparse autoencoder (SAE, a dictionary that reconstructs a layer's output as sparse interpretable features) on the MoE output of layers 4, 30 and 46 of Qwen3-30B-A3B, and used the encoder's affinity in the expert outputs to decompose each feature's activation exactly over the experts. Averaged over a corpus, each expert gets the set of features it principally drives; most of those features have only one or two dominators, and the division of labor runs below coarse domains, down to Java versus front-end web code and geometry versus arithmetic and polynomials.

arXiv

Gradient descent's implicit bias is no longer set by initialization alone: step size tilts the limit toward a perturbed weighted L1 minimizer

The training limit of deep linear diagonal networks had been characterized only for gradient flow, the continuous version with vanishing step size, where the implicit bias is fixed entirely by initialization. This analysis rewrites discrete gradient descent and stochastic gradient descent themselves as perturbed mirror gradient descent, proves convergence of the iterates for any number of layers, and characterizes the limit as a convex minimization problem parameterized by a perturbed initialization. The perturbation shrinks linearly with step size, so the limit corresponds to weighted L1 minimization whose weights depend on initialization, step size and the whole iterate trajectory.

medRxiv

HealthFound learns from longitudinal health records: it beats the strongest comparator by 10 points on average across 1,162 UK Biobank endpoints

Medical language models handle knowledge questions but struggle to infer disease trajectories from an individual's repeated measurements, because literature and exams give little supervision on how indicators covary over time. HealthFound converts records from 501,936 UK Biobank participants into readable longitudinal health profiles and mixes them with medical and general reasoning data, training in three stages: curriculum supervised fine-tuning, rejection-sampled retention fine-tuning and verifiable policy optimization. Across 1,162 endpoints it reaches about 69% mean accuracy, 10.0 percentage points above the strongest comparator within each clinical chapter on average, and it also leads in zero-shot transfer to MIMIC-IV and NHANES.

Ai2 releases ToyBlocks, a controlled block-and-arm world where simulation-trained robots hit 50.0% zero-shot success

Ai2 released ToyBlocks, an open simulation framework built around a tabletop robot arm and blocks, the first of what it calls FoundationWorlds: controlled environments for robot learning. It generates skills and demonstrations automatically with reinforcement learning and motion planning, runs hundreds of plans in parallel on one GPU at up to 24 times real-time speed, and reports execution speed, applied forces and task progress alongside success rates. Across 30 real-world scenes, the ManiFlow low-level model trained only on simulation data reached 81.1% on atomic skills, and the Molmo 2 plus ManiFlow hierarchy reached 50.0% in the real world.

bioRxiv

Spatial transcriptomics skips cell segmentation first: SSAF-T types cells from a literature knowledge graph, then uses that map to guide segmentation

Spatial transcriptomics analysis has long depended on cell segmentation, whose boundaries and transcript assignments are error-prone; segmentation-free methods avoid that step but often need an external single-cell reference or a preset number of cell types. SSAF-T chains segmentation-free cell typing to segmentation: the agent CeLLMan labels clusters from a literature-grounded knowledge graph and marker genes, the labels are spread across the tissue map, and that map constrains nucleus-seeded watershed segmentation. On public data including Visium HD mouse small intestine, Stereo-seq mouse brain, Xenium mouse kidney and MERFISH mouse liver, cell-type distributions match tissue anatomy, segmentation is comparable to Baysor and Cellpose, and runs are faster.

bioRxiv

JuloVelo assigns each gene a kinetics pattern before training, resolving all five hippocampal neurogenesis branches

JuloVelo moves gene kinetics pattern identification ahead of neural network training: each gene is first classified as Circle, Complete induction, or Complete repression from its unspliced–spliced RNA relationship, and training starts from pattern-matched pretrained weights, steering cell-specific kinetics away from biologically implausible parameter regimes. Across eight biological datasets spanning erythrogenesis, neurogenesis, and endocrinogenesis, plus simulated data with known kinetics, it was more stable than constant-rate and cell-specific models, was the only method to resolve all five hippocampal neurogenesis branches, and used promoter chromatin accessibility to process multiome data.

KV selection stops waiting for the target-layer query: EarlySelectKV precomputes indices from proxy queries, lifting long-output throughput by up to 12.4%

Query-conditioned sparse KV selection must wait for the target-layer query before scoring candidates and generating indices, so routing sits on the immediate pre-attention path. EarlySelectKV replaces the routing query with a proxy built from an earlier hidden state, precomputing the KV indices the next layer will access while final attention still uses the real query. On RocketKV it differs by +0.018 points on LongBench, about −0.01 points on RULER and +0.25 percentage points on representative NIAH/Passkey settings; in a TensorRT-LLM deployment with CPU-offloaded routing, end-to-end output throughput rises by up to 12.4% and GPU-resident memory falls by 11.1% of the combined KV/K-summary pool.

Claude message threads enter beta: long conversations send only new messages, cutting time to first token

Anthropic released message threads in beta on the Messages API, keeping long conversations and agent loops on the server so each later request sends only the new messages, which shrinks requests and lowers time to first token. Previously such multi-turn interactions had to resend the full history each time. A thread expires 5 minutes after its last request and is deleted no more than 1 hour after its last use, and it is available on the Claude API, Claude Platform on AWS, Claude Models on Google Cloud (Anthropic managed), and Claude in Microsoft Foundry.

arXiv

Training logs know what deployment cannot: runtime-confounded RL gets doubly robust evaluation and a testable price

When deployment lacks key variables that training logs record in full, runtime confounding can push a reinforcement-learning policy off course over time. The work places the runtime restriction only in the numerator of an importance ratio and estimates nuisance functions from the full data, yielding an asymptotically normal off-policy estimator that attains the semiparametric efficiency bound, a policy-learning regret bound that differs from the full-information optimum by an irreducible runtime gap, and a sample-splitting test for that gap.

bioRxiv

T-cell clonal organization without TCR sequencing: CloneTrast infers clonal niches from transcriptomes alone

CloneTrast uses clonal identities from paired single-cell RNA and TCR sequencing as training labels, so the model learns T-cell clonal-functional states from gene expression alone and needs no TCR data at inference. Training used 26 datasets across 14 cancer types with more than 1.5 million T cells, and external testing used 11 datasets with more than 1 million T cells, including two cancer types unseen in training. On both training and test sets, patient clonal purity improved significantly over a conventional expression embedding, and one NK-like niche enriched for tumor-blood shared TCRs was associated with poor immunotherapy response across studies.

bioRxiv

Automahout hands cell-tracking judgement to an agent: no human input on three public datasets, TRA 0.95–0.96

Cell tracking has long depended on a person deciding, dataset by dataset, what to annotate, when to train, what went wrong and when to stop. Automahout, an autonomous agent on the Mastodon/ELEPHANT platform from RIKEN, first tries existing detectors; where none fits it annotates reference cells, trains a detector from those sparse annotations, reviews the output against them and feeds corrections back, then links the lineage. On three public datasets it ran with no human input and reached TRA of 0.95–0.96.

Right tool, swapped argument: BiCP cuts confirmed injected attacks from 83/682 to 0/682 on a 922-case fixed replay

Tool-using language-model agents can pick the intended tool yet execute an injected argument, and existing counterfactual guards lose source sensitivity when they score with a reasoning prefix that already encodes the injected decision. BiCP removes the current-step reasoning prefix before scoring, probes both the tool-name target and the complete-call target, and routes proposals by operation risk. On a 922-case fixed replay, the full method reduces confirmed InjecAgent attacks from 83/682 to 0/682 and unsafe conditional executions from 33/240 to 0/240, while benign task success rises from 66/120 to 78/120.

LMSYS Org

SGLang stores KV cache in 4 bits: long-context decode throughput rises 26–30%, and FP8 stalls first under agent concurrency

SGLang adds NVFP4 storage to its paged KV cache, cutting per-token key-value bytes to about 56% of FP8. On Qwen3.8-27B at 32K, 160K and 1M input lengths with matched decode concurrency, peak-batch decode throughput rises about 26–30%; on agentic load beyond concurrency 12, FP8 throughput collapses while NVFP4 keeps climbing. Accuracy gaps vary by task, reaching 1.60 points on SWE-bench Verified.

Xiaomi MiMo

MiMo-V2.6 fixes repeated tool calls for about $90,000, 4% of the cost of restarting its RL run

After the MiMo-V2.6 release, repeated identical tool calls in agentic settings were traced to a reward blind spot in reinforcement learning: correctness was rewarded, but excessive calling below the penalty threshold was not. The team first trained a single-turn RL teacher that learned when to stop, then merged that behavior into the main model through multi-teacher on-policy distillation. Repetition rates for MiMo-V2.6-Pro and MiMo-V2.6-Flash fell substantially across context lengths and agent harnesses, and the full training run cost about $90,000, 4% of the estimated $2.31 million for restarting the MixRL alternative.

arXiv

Patients switch topics mid-consultation: PRISM estimates clinical state as a hidden variable and lifts decision accuracy 22.40 points over the strongest baseline

In online medical consultation, patients often volunteer symptoms or pivot to new concerns, so the clinical state is only progressively revealed. PRISM splits triage into belief estimation, policy optimization and response realization: it maintains a posterior over plausible consultation states, then selects the next inquiry from the maximum a posteriori state. On 450 real online consultations, its structured decision accuracy exceeds the strongest baseline by 22.40 percentage points, and BERTScore_F1 by 5.51 points.

arXiv

Where to inject activation steering: TopoSteer ranks layers by the connectivity length of displacement clouds, skipping held-out trials

Activation steering adds a vector to a large language model's internal representations at inference time, but where to add it has mostly been settled by trial: existing selectors score how separable the two activation classes are or how well individual displacements align with their mean, without ever steering the model to check. TopoSteer instead scores each layer by the total length of the Euclidean minimum spanning tree of its per-example displacement cloud, measuring whether the mean-difference vector can stand in for those displacements. Across five instruction-tuned models and six binary persona-steering tasks it beats LayerNavigator in most model-budget comparisons, but the margin depends on model and layer budget and is smaller and more mixed on Qwen-7B and Qwen-32B.

arXiv

RubatoCodec fixes each utterance's event budget so content no longer sets sequence length, and it decodes in a stream

Variable-frame-rate speech codecs allocate tokens by content, but threshold-based allocation lets content set the token count, so at a fixed setting the sequence length a speech generator must produce varies across utterances and datasets. RubatoCodec adds an exact utterance-level event budget and streaming decoding to X-Codec-2, using changes in codec features and waveform spectra to cut speech into variable-duration events, each represented by discrete codes plus an explicit duration. Controlled experiments show adaptive allocation beats fixed-rate coding in reconstruction fidelity and intelligibility at low event rates; in a matched text-to-speech comparison the representation yields lower WER and higher UTMOS and UTMOSv2 with comparable speaker similarity.

Transition-state search stops assuming the ground state: global sampling plus a 30,000-parameter network remaps propane dehydrogenation

Transition-state searches have long started from hand-chosen ground-state structures, which can miss metastable configurations that may govern rates at finite temperature. A workflow pairs global configurational search with a lightweight graph neural network: it samples many reactant, product and intermediate configurations on the potential energy surface, then predicts transition-state geometries with an edge-aware attention network of about 30,000 trainable parameters. On propane dehydrogenation over Pt4 supported on carbon nitride, the workflow recovers the known mechanism and yields competing pathways absent from earlier hand-built models; the authors also note that the metastable tetrahedral Pt4, though intrinsically more reactive, is too costly to form to dominate actual kinetics.

medRxiv

Focal dystonia gene hunt gets a new entry point: DystoniaGeneNet flags familial MRI signatures, then three new genes

Isolated focal dystonia has fewer than five known causal genes, and small families with incomplete penetrance make linkage analysis hard. A 3D convolutional network, DystoniaGeneNet, judged familial status from T1-weighted brain MRI and correctly classified 18 of 21 independent familial cases (85.7%), then guided exome variant prioritization and segregation analysis in 214 individuals. Rare variants segregating with disease emerged in RAP1GAP, TNN and ITSN2, all converging on perisynaptic extracellular matrix–synapse signalling.

Ai2 releases ToyBlocks, a controlled robot-learning sandbox: skills trained in simulation hit 81.1% on real hardware versus 80.0% in sim

Ai2 released ToyBlocks, an open simulation framework built around a robot arm and tabletop blocks, the first controlled world in its FoundationWorlds program. It automatically generates tasks and demonstrations, letting researchers vary training data, repeat experiments and trace why a robot fails. In physical tests, the low-level skill model ManiFlow, trained only on simulation data, reached 80.0% success in simulation and 81.1% on the real robot, while the combined high-level planner plus low-level executor succeeded in 55.5% of simulated episodes and 50.0% of real-world episodes.

bioRxiv

scCont turns single-cell time courses into readable gene modules: nearest-neighbor pairing plus Shapley attribution splits EMT into interpretable transition units

scCont breaks cell-state transitions in time-course single-cell RNA data into interpretable functional transition units: instead of explicit time labels or clustering priors, it selects positive pairs with a k-nearest-neighbor graph in expression space for contrastive learning, then uses Shapley attribution to map latent dimensions back to gene programs. Across four SERGIO simulated datasets and 13 epithelial-to-mesenchymal transition time-course datasets, its gene modules carry statistical filtering and GO enrichment annotation; on simulated data at k=10, background genes make up 7.0% of the 100 highest-attributed genes per latent, against a 73.3% chance level.

arXiv

A 30B model won't fit on one consumer GPU: run some layers on the CPU and hide the weight transfers behind that work

When model weights do not fit in a single consumer GPU, on-demand weight transfer takes about 98% of decode time. A layer-wise schedule runs some layers on the CPU while asynchronously moving the next layer's weights to the GPU, hiding the transfer behind CPU computation; on an RTX 5090 desktop, OPT-30B inference runs 3.5 times faster than HuggingFace Accelerate and 6.3 times faster than DeepSpeed Zero-Inference.

bioRxiv

Cell-line drug sensitivity must reach patients: MODAE+ aligns the two domains while keeping tumour lineage, and its predicted sensitivity tracks survival

Transferring drug sensitivity from cancer cell lines to patient tumours is hard because aligning the two domains can erase tumour-lineage structure. MODAE+ jointly optimizes domain alignment, deconfounding, drug-response prediction, survival prediction and lineage classification in one shared latent space, with adaptive multitask weighting to balance them. On matched treated TCGA subsets, its predicted sensitivity reached a 41.5% Cox-significant rate for overall survival, versus 4.9% for CODE-AE-ADV.

arXiv

Knowledge-graph prompts don't need the whole graph: relation knowledge picks a dozen facts, and seven open LLMs answer better

Knowledge-graph question answering usually ranks facts by relevance and packs them into the prompt, but relevance guarantees neither sufficiency nor consistency. This method uses relation knowledge, either hand-written rules for what relations mean and how they compose or a mapping learned from training questions annotated with relation paths, to search the graph for a compact fact set that derives an answer, then applies a derivability check for whether an answer follows and a consistency check for whether facts conflict, with a validation-chosen gate deciding when the derived answer replaces the LLM's. On WebQSP, seven open LLMs read these contexts, 14.7 facts on average, at 10.2 exact-match points above SubgraphRAG's 100 facts.

LLM-assisted chart review lifts skin-toxicity F1 from 0.77 to 0.88 and cuts reported review time by about a third

Identifying cutaneous immune-related adverse events (cirAEs) in outpatient notes of patients on immune checkpoint inhibitors has depended on manual chart review, which is slow and inconsistent between reviewers. In a multi-institution study, non-dermatologist reviewers adjudicated with a retrieval-augmented, multi-agent large language model that returned a binary recommendation plus the supporting note excerpts. Against ground truth from an oncodermatologist, the assisted group reached F1 0.88 and Cohen's κ 0.82 versus 0.77 and 0.50 for manual review, and reviewers self-reported a drop from 15 to 10 minutes per chart.

medRxiv

Therapy sessions can now run in silico: raising therapist empathy prompts lifts every motivational-interviewing integrity score

Psychotherapy research is constrained by costly trials and clinical features that are hard to manipulate at random. A preregistered proof-of-concept study paired therapist and patient agents built on a locally deployed Llama-3.3-70B-Instruct to generate 512 automated motivational interviewing sessions, manipulating only the therapist prompts for empathy, affirmation and alliance building. Among 480 sessions retained for analysis, all four motivational interviewing treatment integrity global ratings were higher under high common factors, with adjusted mean differences of 0.54 to 0.95 points.

NaceAI

Drex opens four decision models that score every option in one pass, answering a typical request in 183 ms

Drex replaces asking a large model to generate text and parsing an answer with a single forward pass that scores each supplied option. The largest of the four open models, Drex Max, scores 67.52 on the public Decision Index 0.4.1 suite against 60.70 for Jev 1.14.0, and drops less than a point when private tests are added. On Decision Bench v4 it is statistically tied with d3-turbo and GPT-6 Sol and 1.6 points behind Claude Opus 5.5, while answering a typical request in 183 ms.

PathAI

MASH trial pathology scoring gains a regulator-qualified AI tool: AIM-MASH AI Assist leaves under 2% of cases needing secondary review

PathAI's AIM-MASH AI Assist received both European Medicines Agency qualification and US FDA Drug Development Tool qualification in 2025, making it an AI-assisted pathology scoring tool for enrollment and endpoint assessment in MASH clinical trials. MASH liver biopsy scoring has long suffered from inter-reader and intra-reader inconsistency, which can dilute enrolled populations and depress observed treatment effects. The tool predicts MASH CRN grades and stages from whole slide images, and across 1,400 biopsies AI-assisted pathologists matched the median agreement of three unassisted pathologists with consensus ground truth.

Inductive Bio

Beacon-2 turns human efficacious dose into a computable reward: agent cuts predicted dose 17-fold

Inductive released Beacon-2, a unified system that predicts a molecule's human efficacious dose end-to-end from chemical structure and treats that dose as the reward function for chemical optimization. AI drug discovery had focused largely on potency, one input to dose. On 325 compounds from the ExpansionRx blind challenge, fully blind dose predictions matched doses computed from measured ADME data with a Spearman rank correlation of 0.79 and an average fold error of 2.4x; across 20 partner programs the average rank correlation was 0.61.

Claude Platform adds an IP allowlist for organizations, so a leaked API key only works from listed addresses

Claude Platform now offers organizations an IP allowlist in the Claude Console, in beta. Previously a leaked API key could be used from any address to reach covered services; with the allowlist on, requests from addresses not on the list are refused, limiting where the key can be used. Admins can add IPv4 and IPv6 addresses or CIDR ranges, up to 1,000 per organization.

arXiv

Diffusion language models can learn from autoregressive teachers: JustOPD lifts Dream-7B's math reasoning while keeping any-order decoding

Autoregressive models generate strictly left to right, while diffusion language models denoise in arbitrary order, so the former's token-level supervision does not transfer directly. JustOPD forces the diffusion student to roll out left to right during training, letting a Qwen3-14B teacher supervise every intermediate state, while inference keeps any-order decoding. With Dream-7B as student and Qwen3-14B as teacher on GSM8K and MATH500, scores rise over the base model across several divergences.

arXiv

Equally accurate models disagree on advice: ORPM budgets for the worst case and reaches 62.5% joint validity on trees

When several similarly performing models disagree about the same person, recourse computed for one model can fail on another. ORPM formulates recourse as budget-constrained minimization of the worst-case validity loss over a competing set of models, and solves it by alternating an approximate oracle with multiplicative-weights updates, with proven convergence to an approximate equilibrium when losses are bounded and the oracle's global error is controlled. Across one synthetic and five real datasets, linear, neural, mixed and decision-tree competing sets reach high joint validity in many settings; on COMPAS with five decision trees at budget 5, ORPM reaches 62.5% joint validity versus 46.0% for the RobX-constrained adaptation.

medRxiv

Colorectal cancer recurrence after surgery gets a spatial host-microbiome readout: AUC 0.81 versus 0.45 for standard pathology

Whether colorectal cancer recurs after resection has been judged mainly from routine pathology such as lymphovascular invasion, perineural invasion, tumor budding and Ki-67. AlphaFISH pairs a sequencing-free nanoprobe biochip with a transformer model to read 41 host transcripts and 51 bacterial genera across 149 colorectal biopsies, and in 28 patients followed for one year after surgery it predicted recurrence or metastasis with an AUC of 0.81, against 0.45 for the combined routine clinical markers. The result comes from a preprint that has not been peer reviewed, on a limited sample.

RL weight refit stops broadcasting whole tensors: NCCL M2N Reshard ships open source, cutting refit latency by up to about five times

In reinforcement learning post-training, training and inference run on separate GPUs, and the latest weights must be moved from the training side to the inference side at every step; this transfer is called refit. The conventional approach all-gathers the complete parameter and then broadcasts it, so an inference GPU receives the full tensor even when it needs only a shard, giving a payload of roughly twice the model's weights. NVIDIA recasts refit as resharding a distributed tensor between the training and inference layouts and releases NCCL M2N Reshard as an open-source reference implementation; in NeMo RL benchmarks, refit latency falls by 2.7x to 5.7x relative to gather-and-broadcast refit.

anthropics/skills

Anthropic opens its Claude skills repository: document, PDF and spreadsheet skills go Apache 2.0 as developer references

Anthropic has published a repository of example skills for the skills system Claude uses: a skill is a folder of instructions, scripts and resources that Claude loads dynamically to complete a specialized task repeatably, such as producing documents under a company's brand guidelines, analyzing data with an organization's workflows, or automating personal tasks. The repository also open-sources, under Apache 2.0, the docx, pdf, pptx and xlsx document skills that power Claude's document capabilities, as a reference for more complex skills in a production AI application; the skills are for demonstration and education only, and behavior received from Claude may differ from what they show, so they should be tested thoroughly before critical use.

arXiv

When students write wrong, teachers drift too: SPTA first teaches the teacher to continue from a student's half-finished reasoning

On-policy distillation trains a student on trajectories the student itself generates, but student prefixes can carry reasoning errors or patterns unfamiliar to the teacher, and the teacher's token-level supervision becomes less reliable as prefixes grow longer. Before distillation begins, SPTA trains the teacher on student prefixes of random lengths, rewarding correct final answers, so the teacher learns to recover from student-induced states rather than imitate the student's reasoning; standard on-policy distillation then proceeds with the distillation objective unchanged. On mathematical reasoning benchmarks, students trained with SPTA average better than under standard on-policy distillation and better than under on-policy distillation with task-level RLVR-adapted teachers.

arXiv

A 4B multimodal model reads and writes mobile UIs: fine-grained perception lifts generation score to 4.92

UI-UG 2 is a 4B-parameter multimodal large language model that trains mobile UI understanding and generation in one pipeline. It annotates over 30,000 screenshots from RICO, VINS, Android in the Wild and Android Control with an 80-category two-level taxonomy aligned to front-end component semantics, paired with more than 5,000 requirement–screenshot–JSON tuples. Generation is optimized by online render-aware GRPO: sampled DSL outputs are rendered by a Playwright server-side pipeline, then scored by an LLM judge and contrastive preference ranking. On its own 80-category benchmark it gives the strongest referring and dense-grounding results among evaluated models, and its composite generation score of 4.92 is the highest among compared models.

Typhoon intensity forecasts stop reading cloud images alone: TCFNet steers visual encoding with pressure trends, cutting 24-hour pressure error to 9.52 hPa

Tropical cyclone intensity forecasting has relied on best-track data or geostationary satellite imagery, yet similar cloud patterns can accompany intensification, steady state or weakening, and generic fusion strategies cannot tell them apart. TCFNet defines intensity trend from pressure gradients, uses it to select positive pairs for contrastive learning so the visual encoder learns cloud representations aligned with intensity change, then propagates states continuously to arbitrary lead times with neural ordinary differential equations. For 24-hour forecasts in the Western North Pacific and South Pacific, pressure RMSE is 9.52 hPa and 7.00 hPa respectively, and the critical success index for rapid intensification is 45.26%.

arXiv

A 4B clinical scribe plus a fixed verifier keeps three quarters of notes on-device and matches frontier acceptance

Clinical dialogue-to-note generation is high-volume and intolerant of fabrication; a 4B-parameter model inside a fixed four-evaluator verification stack comes close to a frontier model on factual entailment, with its deficit concentrated in inter-section structure. Treating verifier rejection as an escalation signal reaches 99.6% end-to-end acceptance against 98.4% for frontier-only, statistically indistinguishable, while three quarters of encounters need no frontier generation call.

arXiv

Sparse-autoencoder steering gets an information-theoretic design: DESSIRT beats a contrastive baseline on most question modes in Llama and Gemma

Sparse-autoencoder (SAE) steering has relied on contrastive activation statistics to pick features, although feature interpretability and steering utility are not necessarily aligned. DESSIRT represents each dataset as a vector of SAE feature firing probabilities, measures deviation from a target distribution with Jensen–Shannon divergence, and constructs steering vectors analytically from that divergence. In a seven-mode question-generation task, DESSIRT-2 beat the SDCV baseline on all but one mode in Llama 3.1-8B-Instruct and on most modes in Gemma-2-9B-IT.

Genoria AI releases Operon-S1, splitting judgment out of the agent loop: flipping option order moves about 6% of answers, down from about 37%

Genoria AI, under BGI Group's MGI, released Operon-S1, which pulls key judgments out of a biomedical AI agent's execution loop and has a lightweight judgment model flag and review them at 13 decision points while ProtoPilot still plans and runs the analysis. On 750 multiple-choice questions not used in that training round, flipping only the option order changed about 6% of answers, down from about 37%; with the untrained initial LAYA version, SeqQA cost fell 5.8%, but scores on the separate seqqa2 sequence-reasoning test dropped about 1.3 percentage points.

bioRxiv

Given only an enzyme, a generator writes the full reaction: 25.0% of metabolite-recombination pairs recovered exactly within 400 candidates

Enzyme function prediction has relied on homology search or on mapping enzymes to known reactions, so it cannot output a reaction absent from its training data. A model conditioned on enzyme sequence and AlphaFold structure and generating a reaction metabolite by metabolite recovers the complete correct reaction for 25.0% of metabolite-recombination test pairs within 400 sampled candidates on the reaction-disjoint EnzymeMap_x benchmark, and for only 1.6% of pairs containing a metabolite unseen in training. A matched ablation finds no measurable effect of the structural channel on exact recovery; vocabulary coverage and chemical initialisation account for most of the gain.

medRxiv

A standard ECG can now yield synthetic heart-muscle motion: synthetic e′ predicts post-discharge death on its own and lifts discrimination from 0.67 to 0.70

A multi-cohort external validation shows that a previously trained generative adversarial network, applied without retraining, can synthesize mitral annular tissue-Doppler velocities and displacement from a standard 12-lead ECG. Among 1,065 hospitalized acute myocardial infarction patients, synthetic e′ independently predicted all-cause mortality beyond the GRACE score; in the post-discharge subgroup it raised discrimination from a C-index of 0.67 to 0.70 and stayed independent of AI-ECG-predicted and measured ejection fraction. In 219,564 outpatients, all three parameters were associated with MI-specific mortality, with MAPSE showing the largest effect.

arXiv

Natural language now builds Dify workflows: ChatDify's planner-executor-reviewer agents reach 0.96 success on 100 production-style tasks

Building an LLM workflow on a platform like Dify used to mean manually picking nodes, filling in parameters and wiring connections, which is slow and error-prone. ChatDify hands the job to three collaborating agents: a planner that decomposes the request into a directed acyclic graph, an executor that synthesizes node parameters under schema constraints and compiles them into Dify's DSL, and a reviewer that runs static checks plus sandboxed execution with LLM judging in a closed refinement loop. On 100 production-inspired Dify tasks with Qwen-3.7, GLM-5.1 and DeepSeek-v4 as backends, success rates were 0.96, 0.91 and 0.75, above the zero-shot baseline with dynamic repair.

bioRxiv

Single-cell sequencing only yields snapshots: a latent cell-state model fills in gene expression at unobserved timepoints

Single-cell RNA sequencing destroys each cell as it measures it and samples only discrete timepoints, so one cell's expression profile cannot be followed continuously. The Latent Cell-State Model approximates cell-state transitions as a Markov chain and adds a low-dimensional continuous latent variable to generate expression counts given cell state, time and gene. On the pancreatic development and Waddington-OT reprogramming datasets, maximum mean discrepancy between generated and real samples at held-out timepoints was 0.011 and 0.006 (pancreatic days 3 and 6) and 0.030 and 0.018 (reprogramming days 3.5 and 4), lower than the three compared methods.

Vercel News

TypeSafe AI's Jev lands on AI Gateway: decisions without token-by-token text, up to 193.6x faster in vendor tests

TypeSafe AI's probabilistic decision model Jev is now available on Vercel AI Gateway, letting an application hand in a state and get back typed Choice, Score and Boolean answers with probabilities. Regular language models generate text one token at a time for the application to parse and validate; Jev evaluates all declared questions in parallel and returns structured answers directly. TypeSafe reports Jev was up to 193.6x faster and 444.6x cheaper than LLMs on its workflow evaluations, for uses such as picking the next tool in an agent loop, deciding whether to continue or stop, scoring risk, and verifying outputs.

arXiv

RIDGE lets one game agent switch play styles mid-episode, so a single run unlocks both the wood pickaxe and sword

In the Crafter survival environment, a deep RL agent trained on a fixed reward plays only one way, while training one agent per persona requires merging several agents at deployment. RIDGE blends four persona rewards with weights that vary smoothly with game state and keeps one value head per persona, letting a single PPO agent shift styles within an episode. With four personas, one RIDGE agent unlocks both the wood pickaxe and the wood sword, while the Craftsman and Warrior baselines each master only one branch; a sharpness ablation shows state-conditioning itself drives the gain.

OpenRouter Blog

OpenRouter puts the code sandbox inside the API request: any model can run shell server-side, with network off by default

OpenRouter has released two server-side code execution tools, openrouter:shell and openrouter:bash, which let a model run commands inside a platform-hosted isolated container during the API request instead of the developer operating a sandbox. Previously OpenAI, Anthropic and Google each offered this only for their own models, while self-hosting meant choosing an image, provisioning compute and owning the security boundary. Both tools are in beta, outbound network is off by default, sandbox time is billed at $0.0001 per second, and a new or sleeping container carries a 30-second minimum.

arXiv

CheXPoT checks chest X-ray reports after generation: MedGemma-4B micro-average precision rises from 19.2% to 46.8%

Chest X-ray vision-language models can write fluent reports that nonetheless assert findings absent from the image, and earlier fixes mostly retrained the generator through reinforcement learning, preference optimization or chain-of-thought supervision. CheXPoT instead works after generation: it decomposes a report into checkable predicates, tests each against a visual evidence table built from a chest X-ray classifier and Grad-CAM locations, and rewrites the report after removing predicates the image cannot support. On a 4,145-image held-out split, MedGemma-4B reports moved from 19.2% to 46.8% micro-average precision and from 23.0% to 49.4% micro-average F1, with significant precision gains on 8 of 14 CheXpert classes and no significant decreases in precision or F1.

arXiv

Option order stops steering the answer: iterated cyclic reordering drives flip rate to zero across five benchmarks and five models

System One decision models answer a choice question in one forward pass, but the answer shifts with the order in which options are listed, and the probabilities carry a prior over answer labels. IJev starts from an order that ignores the input order, repeatedly reorders options by a prior-corrected cyclic average, and averages the round distributions instead of returning the last round. Across five benchmarks and five models, every cell has flip rate zero; the default uniform round average lowers negative log-likelihood in 24 of 25 cells while accuracy stays comparable to a single cyclic average.

arXiv

GRPO's group baseline can now tilt two ways: strategy-based subgroup offsets lift multi-sample coverage modestly but consistently

GRPO scores every rollout of a prompt against one shared group-mean baseline, yet rollouts of the same prompt often follow different solution strategies with different reward distributions. This work defines the subgroup offset as a subgroup mean's deviation from the global mean and shifts the baseline along it by a single signed coefficient: the positive sign pulls credit toward a rollout's standing inside its subgroup, the negative sign pulls it toward the subgroup's overall quality. On Qwen3-8B-Base and Olmo3-7B-Base across four competition-level math benchmarks, both directions give modest but consistent gains over an anchor that shares the same strategy-conditioned sampling and differs only in the baseline, concentrated in pass@16, with the negative direction stronger.

LMSYS Org

XM-Sparse moves sparse-attention KV cache off HBM: 49.25% lower time per token at 16K context and matched batch

Netpreme attaches its X-Mem™ memory tier to SGLang HiSparse so decode GPUs fetch missed KV entries from high-bandwidth external memory instead of host DRAM over PCIe. At 16K context, batch 192 per GPU and a 20% top-k miss rate, average time per output token falls from 167.48 ms to 84.99 ms, a 49.25% reduction; at a 40% miss rate the reduction is 63.58%. At 20% misses, peak decode throughput is 2.09–3.04× that of host DRAM across 16K to 1M contexts.

Asimov

Asimov and Sidewinder partner on cell line development: a 4-chain bispecific antibody reaches clonal titers above 10 g/L in a platform fed-batch process

Asimov announced a cell line development partnership with Sidewinder Therapeutics and delivered a cell line for Sidewinder's 4-chain bispecific antibody candidate for solid tumors. Such complex molecules are hard to express, and Sidewinder needed both the required expression level and consistent product quality. Asimov ran the custom program with its CHO Edge system, which combines a GS knock-out CHO host, a hyperactive transposase, a genetic parts library and Kernel, its AI-driven genetic design software; in a platform fed-batch process the cell line achieved clonal titers of over 10 g/L.

Bone hyperspectral 3D reconstruction drops external camera poses: BoNeRF-HS tops PSNR and SSIM on mouse bone and two bone analogues

Low texture, specular reflection and irregular morphology make external pose estimation such as COLMAP unreliable on bone surfaces, yet existing hyperspectral 3D reconstruction methods depend on such poses. BoNeRF-HS jointly optimizes camera intrinsics, per-view poses, volume density and the hyperspectral radiance field, and adds a gated spectral adapter head that learns a residual correction across neighbouring bands. On 45-view, 120-band, 400–1000 nm data from mouse bone, a trabecular bone analogue and a cortical bone analogue, it gives the highest PSNR and SSIM on all three specimens, with PSNR 29.94 and SSIM 0.9254 on mouse bone.

Anthropic

Anthropic opens life-sciences guest investigator call: 8 to 12 weeks with Claude on causal human biology and drug discovery

Anthropic has opened a call for guest investigators in the life sciences, inviting principal investigators and their groups at academic institutions, nonprofits, or government labs to work directly with Anthropic researchers for 8 to 12 weeks on causal human biology, structural and computational molecular biology, medicinal chemistry, drug discovery, and clinical science using Claude. Anthropic runs its models and harnesses at no cost, outputs are published jointly with open-source data and code, and guest investigators retain rights to their data throughout. Applications are open for about 14 days, with selections expected by email roughly 14 days after the close.

medRxiv

Sepsis glucose digital twins stop waiting for error thresholds: a frozen PatchTST plus reinforcement-learning residual fix improved one-step forecasts in all 10 ICU patients

Glucose digital twins in septic intensive care previously refit the model only after forecast error crossed a threshold, a reactive correction. This work reports a proactive workflow: a frozen PatchTST foundation model produces a one-step forecast, and an Actor–Critic reinforcement-learning agent uses the last 30-minute glucose window and recent residual history to apply a correction bounded at ±0.05 to that first step, which is then rolled out recursively over 15 steps. On minute-by-minute continuous glucose monitoring from 10 septic ICU patients, the pretrained agent lowered one-step forecast error in all 10 without patient-specific retraining, and mean absolute percentage error on the source patient's test set fell from 0.49% to 0.34%.

Before the match starts, this model picks the winning lineup: joint player-proficiency and team-congruency modeling reaches 61.33% accuracy

The outcome of a temporary team is often foreshadowed before play begins, yet a single player rating says neither whether that player fits the current role nor whether the five assignments complement one another. This work puts both questions into one deep-learning model: it first reads each player's earlier matches against the current champion and role, then compares the two ten-player lineups as a whole. On a chronologically split validation set, the model predicts the winner before play at 61.33% accuracy, above the TrueSkill, CatBoost, GRU and DraftRec comparisons.

Fireworks AI

DeepSeek R1 and V3 get quantization-aware fine-tuning on Fireworks, keeping FP8 serving without the accuracy drop

Fireworks has added quantization-aware fine-tuning to its FireOptimizer adaptation engine, letting teams tailor the open DeepSeek R1 and V3 models to a specific use case. Previously, LoRA-tuned weights merged and served in FP8 lost noticeable accuracy, and the 671-billion-parameter base alone occupies 671 GB in FP8, above the typical 640 GB of an H100 host. The method fake-quantizes merged weights and activations in the forward pass so LoRA gradients stay in bfloat16 while merged weights follow FP8 numerics; on a French-wine review classification task with 15,000 training and 5,000 evaluation records, QAT tuning beat naive FP8 LoRA tuning.

Vercel News

Pixel Canary goes free in stealth on AI Gateway: with Next.js docs supplied, it passes 30 of 31 tasks

Vercel has opened Pixel Canary on AI Gateway under the model id stealth/pixel-canary, free for a limited time while it stays in stealth. The model is strong at coding, including building applications and refactoring existing code, and suits frontend development and mobile app design. On Next.js evals at baseline it ties GPT 6 Astra (high) at a 90.3% success rate, passing 28 of 31 tasks; with Next.js documentation supplied through AGENTS.md it passes 30 of 31 (96.8%), tying the top score in that setting. Scores use pass@4, where a task passes if any of up to four attempts succeeds.

Vercel News

Google's Gemini Omni 1.2 Flash lands on AI Gateway: one API key now generates video with native audio

Google's Gemini Omni 1.2 Flash is now available through AI Gateway, so developers can call it with one API key and no separate Google account. The model generates 3–15 second videos with native audio from text prompts and edits 3–15 second source clips using up to six reference images; each call extends a video by 3–10 seconds up to a 30-second total. Output comes in 360p, 720p, 1080p, and 4K at 16:9 or 9:16.

Vercel News

Microsoft MAI voice models land on Vercel AI Gateway, callable through one API with no inference markup

Vercel and Microsoft AI (MAI) have partnered to bring MAI models to AI Gateway, making the platform one of a limited number of places that offer access to MAI models. Three audio models are supported: MAI-Voice-2.1 generates expressive speech in 23 languages and keeps a consistent speaker across longer passages, MAI-Voice-2.1-Flash targets lower-latency interactions, and MAI-Transcribe-2 Streaming returns partial transcripts as audio arrives. AI Gateway bills these models at their listed rates, with no platform fee or markup on inference.

Fireworks expands European capacity onto Vera Rubin and Grace Blackwell, aiming to serve enterprise agent inference from 2027

Fireworks announced an expanded collaboration with NVIDIA to add capacity in Europe on the NVIDIA Vera Rubin and Grace Blackwell platforms, planning to use the NVIDIA DSX AI factory platform and Spectrum-X Ethernet, with the added capacity supporting European deployments beginning in 2027. The company also introduced enterprise inference capabilities: an Ultrafast inference preview on the NVIDIA Blackwell Platform reaching inference speeds exceeding 1,500 tokens per second, multi-day prompt caching and background mode for long-running agents, and higher rate limits with sub-minute cold starts. These target the latency and cost that arise when a single agent task involves repeated model calls and large amounts of shared context.

Fireworks AI

Fireworks ships 3D FireOptimizer: it searches over 100,000 LLM serving combinations to trade the same quality for lower latency

Fireworks has added 3D FireOptimizer to its FireOptimizer tuning stack, a tool that automatically searches configurations spanning model architecture, quantization, speculation, hardware and parallelism. LLM serving must balance speed, throughput cost and quality, and because every knob affects the others the space exceeds 100,000 combinations. The tool prunes that space using production performance sweeps, heuristics and precomputed profiles, then takes a workload's characteristics and SLAs and returns a few candidate configurations; in three case studies, endpoints it produced gave a better QPS-versus-latency tradeoff than the public-platform baseline at the same quality bar.

Elicit

Elicit turns personal libraries into a shared research hub, letting its Research Agent search and save papers

Elicit has upgraded its Library into a shared research hub where researchers and AI agents work from the same evidence. Previously, the papers behind a decision were scattered across personal reference managers, old searches and project files, so a new teammate could see the final work without seeing the evidence behind it. Teams can now build shared collections, link collections to Projects, and have the Research Agent search personal and shared collections, cite its sources, and save newly found papers directly into a chosen collection.

Vercel News

AI Gateway adds DeepSeek Search and Fetch: one key, two tools, and no swap when you change model providers

Vercel's AI Gateway now offers DeepSeek Search and DeepSeek Fetch: the first returns relevant pages with titles, URLs and summaries, and the second retrieves page content as Markdown for a model to read. Both work with any model that supports tool calling under a single AI Gateway API key, with no separate DeepSeek account, and the same tools stay in place when switching model providers. Search and Fetch each cost $0.75 per 1,000 billable requests; failed requests, timeouts and empty results carry no tool charge, and model tokens are billed separately.