This study comprehensively benchmarked tabular foundation models (TFMs) based on in-context learning for small organic molecule property prediction, comparing several TFMs with multiple machine learning methods across 11 data sets (regression, random and structure-aware splits, up to 10,000 molecules each), and found that TFMs consistently outperform XGBoost, CatBoost, multilayer perceptrons, and other descriptor-based methods even with careful hyperparameter selection for the baselines, achieve accuracy on par with or better than graph-based methods including those pretrained on chemical data, with Uni-Mol2 slightly outperforming TFMs in some experiments, while retrieval (selecting the 500 closest neighbors by Tanimoto similarity for each test molecule) yields further improvement on relat
This study comprehensively benchmarked tabular foundation models (TFMs) based on in-context learning for small organic molecule property prediction, comparing several TFMs with multiple machine learning methods across 11 data sets (regression, random and structure-aware splits, up to 10,000 molecules each), and found that TFMs consistently outperform XGBoost, CatBoost, multilayer perceptrons, and other descriptor-based methods even with careful hyperparameter selection for the baselines, achieve accuracy on par with or better than graph-based methods including those pretrained on chemical data, with Uni-Mol2 slightly outperforming TFMs in some experiments, while retrieval (selecting the 500 closest neighbors by Tanimoto similarity for each test molecule) yields further improvement on relat