Life Sciences
192 items
Decoding neuro-tumor interactions in pancreatic cancer: mechanisms, immunosuppressive networks and therapeutic opportunities
This review systematically examines the molecular mechanisms of perineural invasion (PNI) in pancreatic ductal adenocarcinoma, proposes a unified four-stage model spanning mutual chemotaxis between tumors and nerves, adhesion and invasion at the tumor-nerve interface, extracellular matrix remodeling, and neural plasticity alterations, defines the perineural invasion microenvironment as a neuro-immune privileged sanctuary, and summarizes therapeutic strategies targeting the neuro-immune-tumor axis, ongoing clinical trials, and the applications of multi-omics and artificial intelligence in PNI diagnosis, mechanistic discovery, and therapeutic optimization.
PlantRegMoD: An Integrative and AI-Driven Multi-Omics Database for Plant Regeneration Research
This work constructed PlantRegMoD, an AI-powered integrated multi-omics database dedicated to plant regeneration, hosting 20.54 TB of standardized multi-omics data from 147 projects across 32 plant species and 2,593 samples, establishing a unified hierarchical classification system covering five major categories and nine regeneration models, curating 236 regeneration genes and their 28,190 homologs across 58 representative plant species, and containing 196,423 single cells and over 8.81 million epigenetic peaks, equipped with nine online omics tools and a RAG-based intelligent Q&A system.
RaFT-DM: A Residue-Aware Fusion Transformer With Domain-Wise Memory for Accurate Multi-Label Protein Function Prediction
The loaded text contains only the paper title, "RaFT-DM: A Residue-Aware Fusion Transformer With Domain-Wise Memory for Accurate Multi-Label Protein Function Prediction," together with IEEE Xplore navigation, account, copyright, and front-end script template content, with no abstract, methods, experiments, or results, so it can only be confirmed that the work proposes a method named RaFT-DM that combines a residue-aware fusion transformer with domain-wise memory for multi-label protein function prediction, while its specific approach and findings cannot be summarized.
3D Spatial Interactomics Maps the Dynamics of NF-κB Multiprotein Signalosomes in Single Cells
This work introduces an intelligent sequential proximity ligation assay (iseqPLA) read out by spinning disk confocal microscopy and 3D reconstruction to profile endogenous NF-κB protein-protein interactions inside single cells, treating clusters of co-localized puncta as a measure of supercomplex spatial organization, and tracks supercomplex dissociation, p65 nuclear translocation, and negative-feedback engagement across cytokine time courses in NIH-3T3 mouse fibroblasts, cystic fibrosis (CF) patient-derived macrophage co-cultures with IMR-90 human fibroblasts, and an independent set of healthy- and CF-donor monocyte-fibroblast co-cultures, reporting three findings: 3D volumetric quantification reduces the variance in nuclear-to-cytoplasmic ratio measurements relative to 2D projections, th
In-Context Molecular Property Prediction with LLMs: A Blinding Study on Memorization and Knowledge Conflicts
The study evaluates nine LLM variants across three families (GPT-4.1, GPT-5, Gemini 2.5) on three MoleculeNet datasets (Delaney solubility, Lipophilicity, QM7 atomization energy) using a systematic blinding procedure that iteratively reduces available information, complemented by 0-, 60-, and 1000-shot in-context sample sizes, in order to determine whether molecular property prediction reflects genuine in-context regression or verbatim retrieval of memorized target values, and it adds positive and negative controls for the memorization experiments, structural reference baselines for the multi-shot experiments, and bootstrap confidence intervals for all results; it finds no evidence of verbatim retrieval on these legacy benchmarks and shows that blinding exposes conflicts between pre-traine
EQUAINE: Asking machines to understand equine data and keep learning from it
This thesis explores how sensor signals combined with AI models can quantify equine locomotion and respiration, finding that a single limb sensor can accurately classify terrain type even at low sampling rates, that a combination of head, withers, and pelvis sensors can discriminate between sound and lame strides with performance varying by front or hind limb lameness, that vertical ground forces are better estimated from upper-body sensors than limb sensors, that dynamic respiratory rate can be computed from downsampled audio signals, and that explainable AI confirms models rely on kinematic landmarks similar to those used by veterinarians, while also presenting a data collection platform for harness racing horses and publishing an audio dataset.
Machine Learning-Driven Decoding of Maternal Immune Signatures in Repeated Pregnancy Loss
This study performed single-cell RNA sequencing of decidual tissue from normal pregnancies and cytogenetically normal recurrent pregnancy loss (RPL), combined genotype-based origin assignment with a hierarchical machine learning model (devCellPy) and a transformer-based foundation model (scGPT) for cross-architecture validation, found elevated decidual immune activation with maternal T cells carrying the most distinct and generalizable RPL-associated signatures, and converged network centrality analysis with origin-controlled expression filtering to nominate CXCR4 and JUN as candidate druggable targets.
Deep learning-derived retinal age gap and its associations with lifestyle, systemic, and ocular health in a health screening cohort
Using 29,530 fundus images from a health screening cohort, this study trained a multi-task model to predict retinal age and evaluated the retinal age gap (RAG) in two sub-cohorts, finding that higher RAG was significantly associated with smoking (ex-smokers beta = +0.46 years; current smokers beta = +0.50 years) and clinical diabetes (+2.52 years), and that RAG was significantly higher in eyes with age-related macular degeneration (+0.60 years) and cataract (+1.86 years) than in normal controls.
Microscope control with a natural language agent: an overview of MicroClaw
The authors present MicroClaw, an AI agent that advises on experiment- and system-specific parameters and approaches and collaboratively plans and executes diverse, complex, and reusable imaging workflows across microscope platforms, without requiring expert knowledge.
Page 13 · showing 10