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bioRxiv

3D Spatial Interactomics Maps the Dynamics of NF-κB Multiprotein Signalosomes in Single Cells

This work introduces an intelligent sequential proximity ligation assay (iseqPLA) read out by spinning disk confocal microscopy and 3D reconstruction to profile endogenous NF-κB protein-protein interactions inside single cells, treating clusters of co-localized puncta as a measure of supercomplex spatial organization, and tracks supercomplex dissociation, p65 nuclear translocation, and negative-feedback engagement across cytokine time courses in NIH-3T3 mouse fibroblasts, cystic fibrosis (CF) patient-derived macrophage co-cultures with IMR-90 human fibroblasts, and an independent set of healthy- and CF-donor monocyte-fibroblast co-cultures, reporting three findings: 3D volumetric quantification reduces the variance in nuclear-to-cytoplasmic ratio measurements relative to 2D projections, th